AAL22956 (STM4117, yijO)

Aliases : STM4117, yijO

Description : putative AraC/XylS family regulator [Ensembl]. Helix-turn-helix domain [Interproscan].

Gene families : OG_02_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AAL22956
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AEA92906 OG1RF_10219 methylphosphotriester-DNA alkyltransferase [Ensembl].... 0.02 OrthoFinder
AGT26044 N559_4439 right origin-binding protein [Ensembl]. Helix-turn-helix... 0.04 OrthoFinder
AGT26420 N559_4834, SoxS DNA-binding transcriptional regulator SoxS [Ensembl].... 0.04 OrthoFinder
KNA60578 VCV51_032249 AraC family Bacterial regulatory helix-turn-helix... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
BP GO:0006073 cellular glucan metabolic process IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Enrichment
MF GO:0008882 [glutamate-ammonia-ligase] adenylyltransferase activity IEP Enrichment
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Enrichment
BP GO:0009250 glucan biosynthetic process IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0030243 cellulose metabolic process IEP Enrichment
BP GO:0030244 cellulose biosynthetic process IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0044042 glucan metabolic process IEP Enrichment
BP GO:0051273 beta-glucan metabolic process IEP Enrichment
BP GO:0051274 beta-glucan biosynthetic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR018060 HTH_AraC 191 270
No external refs found!