AAL23116 (STM4292, basR)

Aliases : STM4292, basR

Description : response regulator in two-component regulatory system with BasS [Ensembl]. Response regulator receiver domain, Transcriptional regulatory protein [Interproscan].

Gene families : OG_02_0000001 (OrthoFinder) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL23116
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
AAC76061	qseB, b3025	quorum sensing DNA-binding response regulator in...	0.05	OrthoFinder
AAC76894	cpxR, b3912	response regulator in two-component regulatory system...	0.07	OrthoFinder
AAC77074	basR, b4113	response regulator in two-component regulatory system...	0.29	OrthoFinder
AAK99511	spr0707, ciaR	Response regulator, transcriptional regulatory protein...	0.03	OrthoFinder
AEA92946	OG1RF_10259	response regulator [Ensembl]. Response regulator...	0.03	OrthoFinder
AEA94101	phoP, OG1RF_11414	response regulator [Ensembl]. Response regulator...	0.02	OrthoFinder
AEA95261	OG1RF_12574	response regulator [Ensembl]. Response regulator...	0.02	OrthoFinder
AGT22192	N559_0379	osmolarity response regulator [Ensembl]. Response...	0.04	OrthoFinder
AGT23469	N559_1728, BaeR	DNA-binding transcriptional regulator BaeR [Ensembl]....	0.03	OrthoFinder
AGT25177	N559_3529, BasR	DNA-binding transcriptional regulator BasR [Ensembl]....	0.15	OrthoFinder
AGT26636	N559_5059, CpxR	DNA-binding transcriptional regulator CpxR [Ensembl]....	0.05	OrthoFinder
AHY40431	CJ8421_06120	DNA-binding response regulator [Ensembl]....	0.02	OrthoFinder
AKP15489	ompR, WX61_01443	Transcriptional regulatory protein OmpR [Ensembl]....	0.02	OrthoFinder
CCL17895	BN171_1930007	Two-component response regulator [Ensembl]. Response...	0.02	OrthoFinder
CCL18024	BN171_2030010	Two-component response regulator [Ensembl]. Response...	0.03	OrthoFinder
CCL18125	kdpE, BN171_2100009	Two-component response regulator KdpE [Ensembl]....	0.02	OrthoFinder
CCL20251	BN171_390005	Two-component response regulator [Ensembl]. Response...	0.04	OrthoFinder
CCP43784	trcR, Rv1033c	Two component transcriptional regulator TrcR [Ensembl]....	0.03	OrthoFinder
CPC31435	arlR, ERS093114_00002	Putative response regulator ArlR [Ensembl]....	0.04	OrthoFinder
CPC70217	vicR, ERS093114_01104	Two-component response regulator [Ensembl]....	0.05	OrthoFinder
CRN97861	qseB_1	Transcriptional regulatory protein QseB [Ensembl]....	0.08	OrthoFinder
CRO19997	qseB_2	Transcriptional regulatory protein QseB [Ensembl]....	0.1	OrthoFinder
CRO24960	ompR_1	Transcriptional regulatory protein OmpR [Ensembl]....	0.1	OrthoFinder
CRO38230	rstA	Transcriptional regulatory protein RstA [Ensembl]....	0.03	OrthoFinder
CRO52494	czcR_1	Transcriptional activator protein CzcR [Ensembl]....	0.05	OrthoFinder
CRO55563	arcA_1	Dye resistance protein [Ensembl]. Response regulator...	0.03	OrthoFinder
CRP32671	czcR_3	Transcriptional activator protein CzcR [Ensembl]....	0.04	OrthoFinder
CRP43486	qseB_3	Transcriptional regulatory protein QseB [Ensembl]....	0.04	OrthoFinder
CRP45027	ompR_4	Transcriptional regulatory protein OmpR [Ensembl]....	0.03	OrthoFinder
CRP58313	czcR_4	Transcriptional activator protein CzcR [Ensembl]....	0.04	OrthoFinder
CRP62590	phoP	Virulence transcriptional regulatory protein PhoP...	0.08	OrthoFinder
KNA52268	VCV51_033433	response regulator receiver domain-containing protein...	0.03	OrthoFinder
KNA55120	VCV51_031823	response regulator receiver domain-containing protein...	0.02	OrthoFinder
KNA55649	VCV51_033016	response regulator receiver domain-containing protein...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000030	mannosyltransferase activity	IEP	Enrichment
MF	GO:0000049	tRNA binding	IEP	Enrichment
MF	GO:0003824	catalytic activity	IEP	Enrichment
MF	GO:0004826	phenylalanine-tRNA ligase activity	IEP	Enrichment
BP	GO:0006432	phenylalanyl-tRNA aminoacylation	IEP	Enrichment
BP	GO:0006486	protein glycosylation	IEP	Enrichment
BP	GO:0006493	protein O-linked glycosylation	IEP	Enrichment
BP	GO:0006644	phospholipid metabolic process	IEP	Enrichment
MF	GO:0008484	sulfuric ester hydrolase activity	IEP	Enrichment
BP	GO:0008654	phospholipid biosynthetic process	IEP	Enrichment
MF	GO:0008715	CDP-diacylglycerol diphosphatase activity	IEP	Enrichment
MF	GO:0016740	transferase activity	IEP	Enrichment
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Enrichment
MF	GO:0016758	hexosyltransferase activity	IEP	Enrichment
BP	GO:0043413	macromolecule glycosylation	IEP	Enrichment
BP	GO:0070085	glycosylation	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001867	OmpR/PhoB-type_DNA-bd	145	216
IPR001789	Sig_transdc_resp-reg_receiver	3	113

External Links

No external refs found!

AAL23116 (STM4292, basR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation