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  5. AAL23188

AAL23188 (STM4368, vacB)


Aliases : STM4368, vacB

Description : putative exoribonuclease [Ensembl]. RNB domain, Cold shock domain, S1 RNA binding domain, Ribonuclease B OB domain, Ribonuclease R winged-helix domain [Interproscan].


Gene families : OG_02_0000589 (OrthoFinder) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL23188

Target Alias Description ECC score Gene Family Method Actions
AAC77136 rnr, b4179 exoribonuclease R, RNase R [Ensembl]. RNB domain, Cold... 0.13 OrthoFinder
AGT26307 N559_4716 exoribonuclease R [Ensembl]. S1 RNA binding domain,... 0.03 OrthoFinder
CRO54097 rnr Ribonuclease R [Ensembl]. RNB domain, Cold shock domain,... 0.04 OrthoFinder
KNA54969 VCV51_033153 ribonuclease R [Ensembl]. RNB domain, Cold shock domain,... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP Enrichment
MF GO:0004866 endopeptidase inhibitor activity IEP Enrichment
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Enrichment
BP GO:0006743 ubiquinone metabolic process IEP Enrichment
BP GO:0006744 ubiquinone biosynthetic process IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008813 chorismate lyase activity IEP Enrichment
MF GO:0016833 oxo-acid-lyase activity IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030414 peptidase inhibitor activity IEP Enrichment
BP GO:0042180 cellular ketone metabolic process IEP Enrichment
BP GO:0042181 ketone biosynthetic process IEP Enrichment
MF GO:0061134 peptidase regulator activity IEP Enrichment
MF GO:0061135 endopeptidase regulator activity IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
BP GO:1901661 quinone metabolic process IEP Enrichment
BP GO:1901663 quinone biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR040476 CSD2 164 238
IPR003029 S1_domain 641 724
IPR013668 RNase_R_HTH_12 23 85
IPR013223 RNase_B_OB_dom 87 144
IPR001900 RNase_II/R 260 587
No external refs found!