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  5. CPC32444

CPC32444 (trpB, ERS093114_00044)


Aliases : trpB, ERS093114_00044

Description : Tryptophan synthase beta chain [Ensembl]. Pyridoxal-phosphate dependent enzyme [Interproscan].


Gene families : OG_02_0000713 (OrthoFinder) Phylogenetic Tree(s): OG0000713_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CPC32444
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AAC74343 trpB, b1261 tryptophan synthase, beta subunit [Ensembl].... 0.09 OrthoFinder
AAL00435 spr1632, trpB Tryptophan synthase beta chain [Ensembl].... 0.07 OrthoFinder
AAL20644 STM1726, trpB tryptophan synthase, beta protein [Ensembl].... 0.13 OrthoFinder
AGT24682 N559_3019 tryptophan synthase subunit beta [Ensembl]. 0.33 OrthoFinder
AHY39604 CJ8421_01745 tryptophan synthase subunit beta [Ensembl].... 0.24 OrthoFinder
AKI49625 trpB, L2625_01735 tryptophan synthase, beta subunit [Ensembl].... 0.12 OrthoFinder
CCP44376 trpB, Rv1612 Tryptophan synthase, beta subunit TrpB [Ensembl].... 0.04 OrthoFinder
CRP69095 trpB Tryptophan synthase beta chain [Ensembl].... 0.11 OrthoFinder
EDJ91074 CGSHi22421_10047 tryptophan synthase subunit beta [Ensembl].... 0.14 OrthoFinder
KNA53895 VCV51_030824 tryptophan synthase [Ensembl]. Pyridoxal-phosphate... 0.2 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP Enrichment
MF GO:0004834 tryptophan synthase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006568 tryptophan metabolic process IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006586 indolalkylamine metabolic process IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0042430 indole-containing compound metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001926 PLP-dep 59 383
No external refs found!