CPC52820 (msbA_1, ERS093114_00710)

Aliases : msbA_1, ERS093114_00710

Description : Lipid A export ATP-binding/permease protein MsbA [Ensembl]. ABC transporter transmembrane region [Interproscan].

Gene families : OG_02_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CPC52820
Cluster	HCCA: Cluster_17

Target	Alias	Description	ECC score	Gene Family Method
AAK98847	spr0043, comA	Transport ATP-binding protein ComA [Ensembl]. Peptidase...	0.03	OrthoFinder
AAL00689	spr1887, ABC-NP	ABC transporter ATP-binding/membrane spanning...	0.03	OrthoFinder
AEA93997	OG1RF_11310	multidrug ABC superfamily ATP binding cassette...	0.02	OrthoFinder
AEA94659	OG1RF_11972	multidrug resistance ABC superfamily ATP binding...	0.03	OrthoFinder
AKP14872	WX61_00805	Putative multidrug export ATP-binding/permease protein...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Enrichment
BP	GO:0000921	septin ring assembly	IEP	Enrichment
BP	GO:0001906	cell killing	IEP	Enrichment
CC	GO:0005576	extracellular region	IEP	Enrichment
CC	GO:0005856	cytoskeleton	IEP	Enrichment
CC	GO:0005940	septin ring	IEP	Enrichment
BP	GO:0007010	cytoskeleton organization	IEP	Enrichment
BP	GO:0007154	cell communication	IEP	Enrichment
BP	GO:0007267	cell-cell signaling	IEP	Enrichment
BP	GO:0008653	lipopolysaccharide metabolic process	IEP	Enrichment
MF	GO:0008883	glutamyl-tRNA reductase activity	IEP	Enrichment
BP	GO:0009103	lipopolysaccharide biosynthetic process	IEP	Enrichment
BP	GO:0009372	quorum sensing	IEP	Enrichment
BP	GO:0009595	detection of biotic stimulus	IEP	Enrichment
BP	GO:0009607	response to biotic stimulus	IEP	Enrichment
BP	GO:0016311	dephosphorylation	IEP	Enrichment
BP	GO:0019835	cytolysis	IEP	Enrichment
BP	GO:0023052	signaling	IEP	Enrichment
BP	GO:0031106	septin ring organization	IEP	Enrichment
BP	GO:0031640	killing of cells of other organism	IEP	Enrichment
CC	GO:0032156	septin cytoskeleton	IEP	Enrichment
BP	GO:0032185	septin cytoskeleton organization	IEP	Enrichment
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Enrichment
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Enrichment
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
BP	GO:0043647	inositol phosphate metabolic process	IEP	Enrichment
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Enrichment
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Enrichment
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	Enrichment
BP	GO:0044764	multi-organism cellular process	IEP	Enrichment
BP	GO:0046164	alcohol catabolic process	IEP	Enrichment
BP	GO:0046174	polyol catabolic process	IEP	Enrichment
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	Enrichment
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	Enrichment
MF	GO:0050661	NADP binding	IEP	Enrichment
BP	GO:0051606	detection of stimulus	IEP	Enrichment
BP	GO:0051704	multi-organism process	IEP	Enrichment
BP	GO:0051715	cytolysis in other organism	IEP	Enrichment
BP	GO:0060245	detection of cell density	IEP	Enrichment
BP	GO:0070925	organelle assembly	IEP	Enrichment
BP	GO:0071545	inositol phosphate catabolic process	IEP	Enrichment
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Enrichment
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	351	501
IPR011527	ABC1_TM_dom	24	289

External Links

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CPC52820 (msbA_1, ERS093114_00710)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation