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CPC82640 (rpsT, ERS093114_01415)


Aliases : rpsT, ERS093114_01415

Description : 30S ribosomal protein S20 [Ensembl]. Ribosomal protein S20 [Interproscan].


Gene families : OG_02_0000739 (OrthoFinder) Phylogenetic Tree(s): OG0000739_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CPC82640
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AAC73134 rpsT, b0023 30S ribosomal subunit protein S20 [Ensembl]. Ribosomal... 0.12 OrthoFinder
AAK99544 spr0740, rpsT 30S Ribosomal protein subunit S20 [Ensembl]. Ribosomal... 0.03 OrthoFinder
AAL19007 STM0043, rpsT 30S ribosomal subunit protein S20 [Ensembl]. Ribosomal... 0.08 OrthoFinder
AEA94561 rpsT, OG1RF_11874 30S ribosomal protein S20 [Ensembl]. Ribosomal protein... 0.12 OrthoFinder
AHY40784 rpsT, CJ8421_08060 30S ribosomal protein S20 [Ensembl]. Ribosomal protein... 0.09 OrthoFinder
AKI49477 rpsT, L2625_01579 ribosomal protein S20 [Ensembl]. Ribosomal protein S20... 0.05 OrthoFinder
AKP14560 rpsT, WX61_00479 30S ribosomal protein S20 [Ensembl]. Ribosomal protein... 0.08 OrthoFinder
CCG27674 No alias SSU ribosomal protein S20p [Ensembl]. Ribosomal protein... 0.05 OrthoFinder
CRN65916 rpsT 30S ribosomal protein S20 [Ensembl]. Ribosomal protein... 0.09 OrthoFinder
KNA57452 VCV51_032842 ribosomal protein S20 [Ensembl]. Ribosomal protein S20... 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0050380 undecaprenyl-diphosphatase activity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002583 Ribosomal_S20 2 80
No external refs found!