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CPC89836 (ychF, ERS093114_01564)


Aliases : ychF, ERS093114_01564

Description : GTP-binding and nucleic acid-binding protein YchF [Ensembl]. 50S ribosome-binding GTPase, Protein of unknown function (DUF933) [Interproscan].


Gene families : OG_02_0000457 (OrthoFinder) Phylogenetic Tree(s): OG0000457_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CPC89836
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
CCG27414 YchF GTP-binding and nucleic acid-binding protein YchF... 0.05 OrthoFinder
CRO62569 ychF Ribosome-binding ATPase YchF [Ensembl]. 50S... 0.02 OrthoFinder
KNA50306 VCV51_033685, YchF GTP-binding protein YchF [Ensembl]. 50S ribosome-binding... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0009378 four-way junction helicase activity IEP Enrichment
CC GO:0009379 Holliday junction helicase complex IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
CC GO:0033202 DNA helicase complex IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0045229 external encapsulating structure organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0071554 cell wall organization or biogenesis IEP Enrichment
BP GO:0071555 cell wall organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR013029 YchF_C 281 364
IPR006073 GTP-bd 5 116
No external refs found!