CCL19368 (BN171_3080015)


Aliases : BN171_3080015

Description : Putative signaling protein [Ensembl]. Diguanylate cyclase, EAL domain, Cache domain [Interproscan].


Gene families : OG_02_0000015 (OrthoFinder) Phylogenetic Tree(s): OG0000015_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCL19368
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AAC73920 pdeI, b0833 putative membrane-anchored cyclic-di-GMP... 0.02 OrthoFinder
AGT23390 N559_1644 hypothetical protein [Ensembl]. EAL domain, CSS... 0.03 OrthoFinder
AGT26421 N559_4835 hypothetical protein [Ensembl]. CSS motif domain... 0.03 OrthoFinder
CCL17715 BN171_1700002 Putative diguanylate kinase signaling protein [Ensembl].... 0.06 OrthoFinder
CRO28822 gmr_4 Cyclic di-GMP phosphodiesterase Gmr [Ensembl]. EAL... 0.03 OrthoFinder
CRO94804 ycgF Blue light-and temperature-regulated antirepressor YcgF... 0.03 OrthoFinder
CRP17759 cph2_7 Bacteriophytochrome cph2 [Ensembl]. EAL domain, Response... 0.03 OrthoFinder
CRP31108 cph2_8 Bacteriophytochrome cph2 [Ensembl]. GAF domain, EAL... 0.05 OrthoFinder
KNA59789 VCV51_032484 EAL domain-containing protein [Ensembl]. GAF domain, EAL... 0.03 OrthoFinder
KNA60571 VCV51_032242 EAL domain-containing protein [Ensembl]. EAL domain,... 0.04 OrthoFinder
KNA60689 VCV51_032128 EAL domain-containing protein [Ensembl]. EAL domain... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0007267 cell-cell signaling IEP Enrichment
BP GO:0009372 quorum sensing IEP Enrichment
BP GO:0009405 obsolete pathogenesis IEP Enrichment
BP GO:0009595 detection of biotic stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0023052 signaling IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0044764 multi-organism cellular process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0051606 detection of stimulus IEP Enrichment
BP GO:0051704 multi-organism process IEP Enrichment
BP GO:0060245 detection of cell density IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000160 GGDEF_dom 321 470
IPR033479 dCache_1 41 270
IPR001633 EAL_dom 499 735
UniProtKB U3WYS7