CPD26098 (licR_4, ERS093114_02421)

Aliases : licR_4, ERS093114_02421

Description : PTS system mannitol (Cryptic)-specific transporter subunit IIA [Ensembl]. PRD domain, HTH domain, PTS system, Mga helix-turn-helix domain, Phosphoenolpyruvate-dependent sugar phosphotransferase system [Interproscan].

Gene families : OG_02_0000208 (OrthoFinder) Phylogenetic Tree(s): OG0000208_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CPD26098
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AKI48384	L2625_00440	transcriptional antiterminator [Ensembl]. PRD domain,...	0.03	OrthoFinder
CCG26679	No alias	Transcriptional antiterminator of lichenan operon, BglG...	0.02	OrthoFinder
CCL18729	mtlR, BN171_2590017	Transcription antiterminator, PTS operon regulator...	0.07	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008643	carbohydrate transport	None	Extended
MF	GO:0008982	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	IEA	Interproscan
BP	GO:0009401	phosphoenolpyruvate-dependent sugar phosphotransferase system	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0015144	carbohydrate transmembrane transporter activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006820	anion transport	IEP	Enrichment
MF	GO:0008509	anion transmembrane transporter activity	IEP	Enrichment
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Enrichment
MF	GO:0015128	gluconate transmembrane transporter activity	IEP	Enrichment
BP	GO:0015711	organic anion transport	IEP	Enrichment
BP	GO:0015718	monocarboxylic acid transport	IEP	Enrichment
CC	GO:0016020	membrane	IEP	Enrichment
BP	GO:0035429	gluconate transmembrane transport	IEP	Enrichment
BP	GO:0042873	aldonate transmembrane transport	IEP	Enrichment
MF	GO:0042879	aldonate transmembrane transporter activity	IEP	Enrichment
BP	GO:0046942	carboxylic acid transport	IEP	Enrichment
BP	GO:0098656	anion transmembrane transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003501	PTS_EIIB_2/3	412	468
IPR011608	PRD	208	293
IPR011608	PRD	315	401
IPR007737	Mga_HTH	82	166
IPR013196	HTH_11	6	49
IPR002178	PTS_EIIA_type-2_dom	577	679

External Links

No external refs found!

CPD26098 (licR_4, ERS093114_02421)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation