CPD26098 (licR_4, ERS093114_02421)

Aliases : licR_4, ERS093114_02421

Description : PTS system mannitol (Cryptic)-specific transporter subunit IIA [Ensembl]. PRD domain, HTH domain, PTS system, Mga helix-turn-helix domain, Phosphoenolpyruvate-dependent sugar phosphotransferase system [Interproscan].

Gene families : OG_02_0000208 (OrthoFinder) Phylogenetic Tree(s): OG0000208_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: CPD26098
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AKI48384 L2625_00440 transcriptional antiterminator [Ensembl]. PRD domain,... 0.03 OrthoFinder
CCG26679 No alias Transcriptional antiterminator of lichenan operon, BglG... 0.02 OrthoFinder
CCL18729 mtlR, BN171_2590017 Transcription antiterminator, PTS operon regulator... 0.07 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity IEA Interproscan
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006820 anion transport IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0015128 gluconate transmembrane transporter activity IEP Enrichment
BP GO:0015711 organic anion transport IEP Enrichment
BP GO:0015718 monocarboxylic acid transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0035429 gluconate transmembrane transport IEP Enrichment
BP GO:0042873 aldonate transmembrane transport IEP Enrichment
MF GO:0042879 aldonate transmembrane transporter activity IEP Enrichment
BP GO:0046942 carboxylic acid transport IEP Enrichment
BP GO:0098656 anion transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR003501 PTS_EIIB_2/3 412 468
IPR011608 PRD 208 293
IPR011608 PRD 315 401
IPR007737 Mga_HTH 82 166
IPR013196 HTH_11 6 49
IPR002178 PTS_EIIA_type-2_dom 577 679
No external refs found!