CCL19479 (BN171_3180003)

Aliases : BN171_3180003

Description : Transcriptional regulator, RpiR family [Ensembl]. Helix-turn-helix domain, SIS domain [Interproscan].

Gene families : OG_02_0000035 (OrthoFinder) Phylogenetic Tree(s): OG0000035_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: CCL19479
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AAC74923 yebK, b1853 putative DNA-binding transcriptional regulator... 0.02 OrthoFinder
AGT26100 N559_4495 transcriptional regulator [Ensembl]. Helix-turn-helix... 0.03 OrthoFinder
AGT26243 N559_4649 hypothetical protein [Ensembl]. Helix-turn-helix domain,... 0.03 OrthoFinder
AKI50635 L2625_02846 phosphosugar-binding transcriptional regulator, RpiR... 0.04 OrthoFinder
CCL20136 BN171_370010 Transcriptional regulator, RpiR family [Ensembl].... 0.05 OrthoFinder
CPD10961 ybbH_3, ERS093114_02058 RpiR family transcriptional regulator [Ensembl]. SIS... 0.03 OrthoFinder
KNA58972 VCV51_031233 transcriptional regulator [Ensembl]. SIS domain,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0097367 carbohydrate derivative binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0043546 molybdopterin cofactor binding IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
InterPro domains Description Start Stop
IPR000281 HTH_RpiR 3 74
IPR001347 SIS_dom 126 253
UniProtKB U3X2R6