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  5. CCL19496

CCL19496 (BN171_3180020)


Aliases : BN171_3180020

Description : Transcriptional regulator, RpiR family [Ensembl]. Helix-turn-helix domain, SIS domain [Interproscan].


Gene families : OG_02_0000035 (OrthoFinder) Phylogenetic Tree(s): OG0000035_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCL19496
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AAC74923 yebK, b1853 putative DNA-binding transcriptional regulator... 0.03 OrthoFinder
AAL20803 STM1887, yebK putative transcriptional regulator [Ensembl]. SIS... 0.02 OrthoFinder
AGT26100 N559_4495 transcriptional regulator [Ensembl]. Helix-turn-helix... 0.03 OrthoFinder
CCL20136 BN171_370010 Transcriptional regulator, RpiR family [Ensembl].... 0.05 OrthoFinder
CPD10961 ybbH_3, ERS093114_02058 RpiR family transcriptional regulator [Ensembl]. SIS... 0.03 OrthoFinder
KNA53875 VCV51_030812, HexR DNA-binding transcriptional regulator HexR [Ensembl].... 0.03 OrthoFinder
KNA58972 VCV51_031233 transcriptional regulator [Ensembl]. SIS domain,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
MF GO:0097367 carbohydrate derivative binding IEA Interproscan
BP GO:1901135 carbohydrate derivative metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0007267 cell-cell signaling IEP Enrichment
BP GO:0009372 quorum sensing IEP Enrichment
BP GO:0009405 obsolete pathogenesis IEP Enrichment
BP GO:0009595 detection of biotic stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0023052 signaling IEP Enrichment
BP GO:0044764 multi-organism cellular process IEP Enrichment
BP GO:0051606 detection of stimulus IEP Enrichment
BP GO:0051704 multi-organism process IEP Enrichment
BP GO:0060245 detection of cell density IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR001347 SIS_dom 110 242
IPR000281 HTH_RpiR 1 74
UniProtKB U3WZL8