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  5. CCG26434

CCG26434 (YhcT)


Aliases : YhcT

Description : Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YhcT type [Ensembl]. RNA pseudouridylate synthase [Interproscan].


Gene families : OG_02_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCG26434
Cluster HCAA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AAK99634 spr0830, rluD 23S rRNA pseudouridine synthase (supresses ftsH(ts)... 0.05 OrthoFinder
AAL19059 STM0095, rluA 23S rRNA pseudouridylate 746 synthase [Ensembl]. RNA... 0.02 OrthoFinder
AEA94120 rluD, OG1RF_11433 ribosomal large subunit pseudouridine synthase D... 0.05 OrthoFinder
AEA94726 rluD2, OG1RF_12039 23S rRNA pseudouridylate synthase RluD [Ensembl]. RNA... 0.04 OrthoFinder
CBI66147 rluA, HPB8_590 pseudouridylate synthase [Ensembl]. RNA pseudouridylate... 0.03 OrthoFinder
CPC37205 rluD, ERS093114_00227 Ribosomal large subunit pseudouridine synthase D... 0.04 OrthoFinder
CRO46859 rluC Ribosomal large subunit pseudouridine synthase C... 0.03 OrthoFinder
CRO95170 rluA_1 Ribosomal large subunit pseudouridine synthase A... 0.04 OrthoFinder
KNA57479 VCV51_030462 RluA family pseudouridine synthase [Ensembl]. S4 domain,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0004140 dephospho-CoA kinase activity IEP Enrichment
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Enrichment
MF GO:0004476 mannose-6-phosphate isomerase activity IEP Enrichment
MF GO:0004743 pyruvate kinase activity IEP Enrichment
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Enrichment
BP GO:0006090 pyruvate metabolic process IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0006096 glycolytic process IEP Enrichment
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006757 ATP generation from ADP IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009132 nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0016052 carbohydrate catabolic process IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0046031 ADP metabolic process IEP Enrichment
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Enrichment
BP GO:0046939 nucleotide phosphorylation IEP Enrichment
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP Enrichment
BP GO:0052646 alditol phosphate metabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 97 244
No external refs found!