CCG26601 (RpoD)


Aliases : RpoD

Description : RNA polymerase sigma factor RpoD [Ensembl]. Sigma-70 factor, Sigma-70 region 2, Sigma-70 region 3 [Interproscan].


Gene families : OG_02_0000197 (OrthoFinder) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCG26601
Cluster HCAA: Cluster_18


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0008239 dipeptidyl-peptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR009042 RNA_pol_sigma70_r1_2 97 128
IPR007627 RNA_pol_sigma70_r2 135 204
IPR007630 RNA_pol_sigma70_r4 303 356
IPR007127 RNA_pol_sigma_70_r1_1 13 86
IPR007624 RNA_pol_sigma70_r3 214 290
No external refs found!