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CCG27021


Description : Transcriptional regulators, LysR family [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].


Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCG27021
Cluster HCAA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AAC75590 hcaR, b2537 hca operon transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
AEA94055 OG1RF_11368 LysR family transcriptional regulator [Ensembl]. LysR... 0.05 OrthoFinder
CRN70888 gltC_1 HTH-type transcriptional regulator GltC [Ensembl]. LysR... 0.02 OrthoFinder
CRO72193 hcaR_3 Hca operon transcriptional activator [Ensembl]. LysR... 0.03 OrthoFinder
EDJ91352 CGSHi22421_04593 putative HTH-type transcriptional regulator [Ensembl].... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
MF GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity IEP Enrichment
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP Enrichment
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
InterPro domains Description Start Stop
IPR005119 LysR_subst-bd 92 282
IPR000847 Tscrpt_reg_HTH_LysR 5 64
No external refs found!