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  5. CCG27331

CCG27331


Description : Polyribonucleotide nucleotidyltransferase [Ensembl]. KH domain, S1 RNA binding domain, 3' exoribonuclease family, Polyribonucleotide nucleotidyltransferase [Interproscan].


Gene families : OG_02_0000552 (OrthoFinder) Phylogenetic Tree(s): OG0000552_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCG27331
Cluster HCAA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAK99320 spr0516, pnpA Polyribonucleotide nucleotidyltransferase [Ensembl]. KH... 0.04 OrthoFinder
AAL22154 STM3282, pnp polynucleotide phosphorylase [Ensembl]. KH domain, S1... 0.05 OrthoFinder
AEA95021 pnp, OG1RF_12334 polyribonucleotide nucleotidyltransferase [Ensembl]. KH... 0.03 OrthoFinder
AGT22392 N559_0594 polynucleotide phosphorylase/polyadenylase [Ensembl]. S1... 0.05 OrthoFinder
AKI49327 pnp, L2625_01423 polyribonucleotide nucleotidyltransferase [Ensembl]. S1... 0.06 OrthoFinder
CCP45582 gpsI, Rv2783c Bifunctional protein polyribonucleotide... 0.04 OrthoFinder
CRO21175 pnp Polyribonucleotide nucleotidyltransferase [Ensembl]. KH... 0.07 OrthoFinder
KNA57724 VCV51_030417 polyribonucleotide nucleotidyltransferase [Ensembl]. KH... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 462 532
IPR015847 ExoRNase_PH_dom2 145 208
IPR004088 KH_dom_type_1 560 615
IPR001247 ExoRNase_PH_dom1 13 142
IPR001247 ExoRNase_PH_dom1 326 459
IPR015848 PNPase_PH_RNA-bd_bac/org-type 240 323
IPR003029 S1_domain 622 693
No external refs found!