CCG27509


Description : DNA topoisomerase I [Ensembl]. Toprim domain, DNA topoisomerase, Topoisomerase DNA binding C4 zinc finger [Interproscan].


Gene families : OG_02_0000393 (OrthoFinder) Phylogenetic Tree(s): OG0000393_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCG27509
Cluster HCAA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAK99944 spr1141, topA DNA topoisomerase I [Ensembl]. Toprim domain, DNA... 0.05 OrthoFinder
AAL20632 STM1714, topA DNA topoisomerase type I, omega protein [Ensembl].... 0.08 OrthoFinder
ADK86690 topA, MPNE_0293 DNA topoisomerase I [Ensembl]. Toprim domain [Interproscan]. 0.03 OrthoFinder
AGT24669 N559_3006 DNA topoisomerase I [Ensembl]. Toprim domain [InterProScan]. 0.06 OrthoFinder
AHY40871 CJ8421_08495 DNA topoisomerase I [Ensembl]. Toprim domain, DNA... 0.03 OrthoFinder
AKI49271 topA, L2625_01365 DNA topoisomerase I [Ensembl]. TOPRIM domain, DNA... 0.04 OrthoFinder
CRO91125 topA_2 DNA topoisomerase 1 [Ensembl]. Toprim domain, DNA... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000921 septin ring assembly IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
CC GO:0005856 cytoskeleton IEP Enrichment
CC GO:0005940 septin ring IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0031106 septin ring organization IEP Enrichment
CC GO:0032156 septin cytoskeleton IEP Enrichment
BP GO:0032185 septin cytoskeleton organization IEP Enrichment
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR006171 TOPRIM_domain 6 72
IPR013497 Topo_IA_cen 87 500
IPR013498 Topo_IA_Znf 530 565
IPR013498 Topo_IA_Znf 609 641
IPR013498 Topo_IA_Znf 569 606
No external refs found!