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CCG27581


Description : Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) [Ensembl]. Binding-protein-dependent transport system inner membrane component [Interproscan].


Gene families : OG_02_0000276 (OrthoFinder) Phylogenetic Tree(s): OG0000276_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCG27581
Cluster HCAA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AAC73944 potI, b0857 putrescine ABC transporter permease [Ensembl].... 0.02 OrthoFinder
AAC74208 potC, b1124 spermidine/putrescine ABC transporter permease... 0.05 OrthoFinder
AKI48759 potC, L2625_00830 spermidine/putrescine ABC transporter, permease protein... 0.06 OrthoFinder
CPC39929 ydcV, ERS093114_00323 PotC [Ensembl]. Binding-protein-dependent transport... 0.03 OrthoFinder
CRO82760 ydcV_2 Inner membrane ABC transporter permease protein YdcV... 0.03 OrthoFinder
CRO92466 ydcV_3 Inner membrane ABC transporter permease protein YdcV... 0.02 OrthoFinder
CRO93042 ydcV_4 Inner membrane ABC transporter permease protein YdcV... 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000515 MetI-like 77 244
No external refs found!