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  5. CCG27711

CCG27711


Description : Ribosomal large subunit pseudouridine synthase B [Ensembl]. S4 domain, RNA pseudouridylate synthase [Interproscan].


Gene families : OG_02_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCG27711
Cluster HCAA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AAL00492 spr1689, rluB Ribosomal large subunit pseudouridine synthase B... 0.07 OrthoFinder
AAL20637 STM1719, yciL putative ribosomal large subunit pseudouridine synthase... 0.02 OrthoFinder
AAL23017 STM4193, yjbC putative pseudouridine synthase [Ensembl]. S4 domain,... 0.03 OrthoFinder
AEA93088 rsuA, OG1RF_10401 ribosomal small subunit pseudouridine synthase A... 0.06 OrthoFinder
AGT26476 N559_4892 23S rRNA pseudouridine synthase F [Ensembl]. S4 domain... 0.02 OrthoFinder
AHY40894 CJ8421_08610 putative ribosomal pseudouridine synthase [Ensembl]. S4... 0.03 OrthoFinder
AKP14182 rsuA, WX61_00093 Ribosomal small subunit pseudouridine synthase A... 0.03 OrthoFinder
CPC79209 rluB, ERS093114_01325 Ribosomal large subunit pseudouridine synthase B... 0.04 OrthoFinder
EDJ91000 CGSHi22421_02721 16S pseudouridylate 516 synthase [Ensembl]. S4 domain,... 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006382 adenosine to inosine editing IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008961 phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009143 nucleoside triphosphate catabolic process IEP Enrichment
BP GO:0016553 base conversion or substitution editing IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 61 194
IPR002942 S4_RNA-bd 1 47
No external refs found!