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  5. CCP43425

CCP43425 (rpsL, Rv0682)


Aliases : rpsL, Rv0682

Description : 30S ribosomal protein S12 RpsL [Ensembl]. Ribosomal protein S12/S23 [Interproscan].


Gene families : OG_02_0000684 (OrthoFinder) Phylogenetic Tree(s): OG0000684_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCP43425
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AAC76367 rpsL, b3342 30S ribosomal subunit protein S12 [Ensembl]. Ribosomal... 0.16 OrthoFinder
AAK99052 spr0248, rpsL 30S Ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.16 OrthoFinder
AAL22311 STM3448, rpsL 30S ribosomal subunit protein S12 [Ensembl]. Ribosomal... 0.17 OrthoFinder
ADK87065 rpsL, MPNE_0257 ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.05 OrthoFinder
AEA92831 rpsL, OG1RF_10144 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.13 OrthoFinder
AKI50591 rpsL, L2625_02801 ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.08 OrthoFinder
AKP15118 rpsL, WX61_01064 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.05 OrthoFinder
CCG26288 No alias SSU ribosomal protein S12p (S23e) [Ensembl]. Ribosomal... 0.09 OrthoFinder
CCL20678 rpsL, BN171_90004 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.14 OrthoFinder
CPC57151 rpsL, ERS093114_00833 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.14 OrthoFinder
CRO73605 rpsL 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.05 OrthoFinder
EDJ90052 CGSHi22421_05925 tRNA uridine 5-carboxymethylaminomethyl modification... 0.12 OrthoFinder
KNA49090 VCV51_033819 ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004526 ribonuclease P activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016790 thiolester hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 12 123
No external refs found!