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  5. CCP43445

CCP43445 (rplC, Rv0701)


Aliases : rplC, Rv0701

Description : 50S ribosomal protein L3 RplC [Ensembl]. Ribosomal protein L3 [Interproscan].


Gene families : OG_02_0000401 (OrthoFinder) Phylogenetic Tree(s): OG0000401_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCP43445
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AAC76345 rplC, b3320 50S ribosomal subunit protein L3 [Ensembl]. Ribosomal... 0.17 OrthoFinder
AAK98992 spr0188, rplC 50S Ribosomal protein L3 [Ensembl]. Ribosomal protein L3... 0.17 OrthoFinder
AAL22303 STM3440, rplC 50S ribosomal subunit protein L3 [Ensembl]. Ribosomal... 0.17 OrthoFinder
ADK86699 rplC, MPNE_0194 50S ribosomal protein L3 [Ensembl]. Ribosomal protein L3... 0.09 OrthoFinder
AEA92838 rplC, OG1RF_10151 50S ribosomal protein L3 [Ensembl]. Ribosomal protein L3... 0.13 OrthoFinder
AGT22244 N559_0434 50S ribosomal protein L3 [Ensembl]. 0.1 OrthoFinder
AHY40892 rplC, CJ8421_08600 50S ribosomal protein L3 [Ensembl]. Ribosomal protein L3... 0.14 OrthoFinder
AKI50567 rplC, L2625_02777 ribosomal protein L3 [Ensembl]. Ribosomal protein L3... 0.11 OrthoFinder
AKP15123 rplC, WX61_01069 50S ribosomal protein L3 [Ensembl]. Ribosomal protein L3... 0.05 OrthoFinder
CBI65717 rplC, HPB8_160 large subunit ribosomal protein L3 [Ensembl]. Ribosomal... 0.07 OrthoFinder
CCG27379 No alias LSU ribosomal protein L3p (L3e) [Ensembl]. Ribosomal... 0.07 OrthoFinder
CCL20563 rplC, BN171_70003 50S ribosomal protein L3 [Ensembl]. Ribosomal protein L3... 0.15 OrthoFinder
CPD13496 rplC, ERS093114_02122 50S ribosomal protein L3 [Ensembl]. Ribosomal protein L3... 0.17 OrthoFinder
CRO73740 rplC 50S ribosomal protein L3 [Ensembl]. Ribosomal protein L3... 0.14 OrthoFinder
EDJ91354 CGSHi22421_04603 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha... 0.15 OrthoFinder
KNA54972 VCV51_033155 50S ribosomal protein L3 [Ensembl]. Ribosomal protein L3... 0.12 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004140 dephospho-CoA kinase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004526 ribonuclease P activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009403 toxin biosynthetic process IEP Enrichment
BP GO:0009404 toxin metabolic process IEP Enrichment
BP GO:0015936 coenzyme A metabolic process IEP Enrichment
BP GO:0015937 coenzyme A biosynthetic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016790 thiolester hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019748 secondary metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0044550 secondary metabolite biosynthetic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 92 187
No external refs found!