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CCP43463 (rplF, Rv0719)


Aliases : rplF, Rv0719

Description : 50S ribosomal protein L6 RplF [Ensembl]. Ribosomal protein L6 [Interproscan].


Gene families : OG_02_0000395 (OrthoFinder) Phylogenetic Tree(s): OG0000395_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCP43463
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AAC76330 rplF, b3305 50S ribosomal subunit protein L6 [Ensembl]. Ribosomal... 0.13 OrthoFinder
AAK99008 spr0204, rplF 50S Ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.1 OrthoFinder
AAL22288 STM3425, rplF 50S ribosomal subunit protein L6 [Ensembl]. Ribosomal... 0.15 OrthoFinder
ADK87044 rplF, MPNE_0209 ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.05 OrthoFinder
AEA92853 rplF, OG1RF_10166 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.11 OrthoFinder
AGT22257 N559_0449 50S ribosomal protein L6 [Ensembl]. alpha-beta domain... 0.07 OrthoFinder
AHY40877 rplF, CJ8421_08525 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.12 OrthoFinder
AKI50552 rplF, L2625_02762 ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.11 OrthoFinder
AKP15138 rplF, WX61_01084 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.08 OrthoFinder
CBI65732 rplF, HPB8_175 large subunit ribosomal protein L6 [Ensembl]. Ribosomal... 0.06 OrthoFinder
CCG27394 No alias LSU ribosomal protein L6p (L9e) [Ensembl]. Ribosomal... 0.07 OrthoFinder
CCL20578 rplF, BN171_70018 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.11 OrthoFinder
CPD14024 rplF, ERS093114_02137 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.15 OrthoFinder
CRO74186 rplF 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.12 OrthoFinder
EDJ91371 rplF, CGSHi22421_04688 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.1 OrthoFinder
KNA54987 VCV51_033170 ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006536 glutamate metabolic process IEP Enrichment
BP GO:0006537 glutamate biosynthetic process IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
MF GO:0015930 glutamate synthase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Enrichment
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 91 165
IPR020040 Ribosomal_L6_a/b-dom 11 83
No external refs found!