1. Home
  2. Species
  3. Clostridioides difficile
  4. Sequence
  5. CCL20714

CCL20714 (BN171_960006)


Aliases : BN171_960006

Description : LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].


Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCL20714
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AAC76609 yiaU, b3585 putative DNA-binding transcriptional regulator... 0.03 OrthoFinder
AAC76943 oxyR, b3961 oxidative and nitrosative stress transcriptional... 0.02 OrthoFinder
AAL21469 STM2575 putative LysR family transcriptional regulator... 0.03 OrthoFinder
AAL21995 STM3121 putative LysR family transcriptional regulator... 0.01 OrthoFinder
CRO86371 oxyR_2 Morphology and auto-aggregation control protein... 0.01 OrthoFinder
CRP45508 benM_8 Ben and cat operon transcriptional regulator [Ensembl].... 0.01 OrthoFinder
KNA54936 VCV51_031768 LysR substrate binding domain-containing protein... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
InterPro domains Description Start Stop
IPR005119 LysR_subst-bd 90 289
IPR000847 Tscrpt_reg_HTH_LysR 4 62
UniProtKB U3X6H8