CRO80200 (cynR_3)

Aliases : cynR_3

Description : Cyn operon transcriptional activator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRO80200
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
AAC75458	xapR, b2405	transcriptional activator of xapAB [Ensembl]. LysR...	0.03	OrthoFinder
AAL20406	STM1487, ynfL	putative LysR family transcriptional regulator...	0.05	OrthoFinder
AAL21318	STM2424, yfeR	putative LysR family transcriptional regulator...	0.04	OrthoFinder
AEA94055	OG1RF_11368	LysR family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
AGT23181	N559_1423	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT23255	N559_1502	putative LysR-family transcriptional regulator...	0.03	OrthoFinder
AGT23273	N559_1520, CynR	DNA-binding transcriptional regulator CynR [Ensembl]....	0.02	OrthoFinder
AGT23946	N559_2239	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT24668	N559_3005, CysB	transcriptional regulator CysB [Ensembl]. LysR substrate...	0.04	OrthoFinder
AGT24793	N559_3132	LysR family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
AGT26606	N559_5029, OxyR	DNA-binding transcriptional regulator OxyR [Ensembl]....	0.04	OrthoFinder
AKI48437	L2625_00496	transcriptional regulator, LysR family [Ensembl]....	0.02	OrthoFinder
AKI49729	gltC, L2625_01870	transcriptional activator of the glutamate synthase...	0.02	OrthoFinder
AKI50144	L2625_02308	transcriptional regulator, LysR family [Ensembl]. LysR,...	0.02	OrthoFinder
CCL19137	BN171_2880004	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.04	OrthoFinder
CCP45064	Rv2282c	Probable transcription regulator (LysR family)...	0.02	OrthoFinder
CRN70888	gltC_1	HTH-type transcriptional regulator GltC [Ensembl]. LysR...	0.06	OrthoFinder
CRO37348	benM_3	Ben and cat operon transcriptional regulator [Ensembl]....	0.08	OrthoFinder
CRO43121	cmpR_1	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.04	OrthoFinder
CRP00540	cysL_3	CysJI operon transcriptional activator [Ensembl]. LysR...	0.08	OrthoFinder
CRP01952	cmpR_2	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.07	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
MF	GO:0010181	FMN binding	IEP	Enrichment
MF	GO:0022857	transmembrane transporter activity	IEP	Enrichment
BP	GO:0030001	metal ion transport	IEP	Enrichment
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0055085	transmembrane transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	94	300
IPR000847	Tscrpt_reg_HTH_LysR	12	68

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_03484

CRO80200 (cynR_3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation