CRP14840 (ripA_4)

Aliases : ripA_4

Description : HTH-type transcriptional repressor of iron proteins A [Ensembl]. Helix-turn-helix domain [Interproscan].

Gene families : OG_02_0000506 (OrthoFinder) Phylogenetic Tree(s): OG0000506_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRP14840
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AAC74860	nimR, b1790	putative DNA-binding transcriptional regulator...	0.04	OrthoFinder
AAL20204	STM1279, yeaM	putative regulator (AraC/XylS family) [Ensembl]....	0.08	OrthoFinder
AGT24779	N559_3117	putative ARAC-type regulatory protein [Ensembl]....	0.03	OrthoFinder
CRO02656	ripA_3	HTH-type transcriptional repressor of iron proteins A...	0.05	OrthoFinder
CRP25841	ripA_6	HTH-type transcriptional repressor of iron proteins A...	0.04	OrthoFinder
CRP79408	ripA_10	HTH-type transcriptional repressor of iron proteins A...	0.04	OrthoFinder
KNA52289	VCV51_033456	AraC family Bacterial regulatory helix-turn-helix...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006813	potassium ion transport	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0015078	proton transmembrane transporter activity	IEP	Enrichment
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Enrichment
MF	GO:0015297	antiporter activity	IEP	Enrichment
MF	GO:0015298	solute:cation antiporter activity	IEP	Enrichment
MF	GO:0015299	solute:proton antiporter activity	IEP	Enrichment
CC	GO:0016021	integral component of membrane	IEP	Enrichment
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Enrichment
CC	GO:0031224	intrinsic component of membrane	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR018060	HTH_AraC	175	250

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_04544

CRP14840 (ripA_4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation