KNA49526 (VCV51_030325, RpoD)

Aliases : VCV51_030325, RpoD

Description : RNA polymerase sigma factor RpoD [Ensembl]. Sigma-70 factor, Sigma-70 region 2, Sigma-70 region 3 [Interproscan].

Gene families : OG_02_0000197 (OrthoFinder) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: KNA49526
Cluster	HCCA: Cluster_1

Target	Alias	Description	ECC score	Gene Family Method	Actions
AGT22495	N559_0700, RpoD	RNA polymerase sigma factor RpoD [Ensembl]....	0.03	OrthoFinder
EDJ91461	aspA, CGSHi22421_06817	aspartate ammonia-lyase [Ensembl]. Sigma-70 factor,...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016987	sigma factor activity	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000270	peptidoglycan metabolic process	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003690	double-stranded DNA binding	IEP	Enrichment
MF	GO:0005488	binding	IEP	Enrichment
BP	GO:0006027	glycosaminoglycan catabolic process	IEP	Enrichment
BP	GO:0006298	mismatch repair	IEP	Enrichment
BP	GO:0006353	DNA-templated transcription, termination	IEP	Enrichment
BP	GO:0009253	peptidoglycan catabolic process	IEP	Enrichment
CC	GO:0009360	DNA polymerase III complex	IEP	Enrichment
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Enrichment
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Enrichment
MF	GO:0016726	oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor	IEP	Enrichment
BP	GO:0030203	glycosaminoglycan metabolic process	IEP	Enrichment
MF	GO:0030983	mismatched DNA binding	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Enrichment
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Enrichment
CC	GO:0042575	DNA polymerase complex	IEP	Enrichment
BP	GO:0045229	external encapsulating structure organization	IEP	Enrichment
MF	GO:0050380	undecaprenyl-diphosphatase activity	IEP	Enrichment
MF	GO:0051745	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	IEP	Enrichment
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Enrichment
BP	GO:0071554	cell wall organization or biogenesis	IEP	Enrichment
BP	GO:0071555	cell wall organization	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
CC	GO:0140535	intracellular protein-containing complex	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment
CC	GO:1902494	catalytic complex	IEP	Enrichment
CC	GO:1990234	transferase complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007627	RNA_pol_sigma70_r2	391	460
IPR007624	RNA_pol_sigma70_r3	470	545
IPR007127	RNA_pol_sigma_70_r1_1	4	80
IPR007630	RNA_pol_sigma70_r4	559	612
IPR009042	RNA_pol_sigma70_r1_2	98	128
IPR007631	RNA_pol_sigma_70_non-ess	139	360

External Links

No external refs found!

KNA49526 (VCV51_030325, RpoD)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation