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  5. KNA53618

KNA53618 (VCV51_030089)


Aliases : VCV51_030089

Description : diaminopimelate epimerase [Ensembl]. Diaminopimelate epimerase [Interproscan].


Gene families : OG_02_0000862 (OrthoFinder) Phylogenetic Tree(s): OG0000862_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA53618
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AAC76812 dapF, b3809 diaminopimelate epimerase [Ensembl]. Diaminopimelate... 0.04 OrthoFinder
AAL22791 STM3947, dapF diaminopimelate epimerase [Ensembl]. Diaminopimelate... 0.06 OrthoFinder
AKI50013 dapF, L2625_02166 diaminopimelate epimerase [Ensembl]. Diaminopimelate... 0.04 OrthoFinder
AKP15713 dapF, WX61_01678 Diaminopimelate epimerase [Ensembl]. Diaminopimelate... 0.03 OrthoFinder
CBI66319 dapF, HPB8_762 Diaminopimelate epimerase [Ensembl]. Diaminopimelate... 0.02 OrthoFinder
CRO99899 dapF Diaminopimelate epimerase [Ensembl]. Diaminopimelate... 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000270 peptidoglycan metabolic process IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
BP GO:0006027 glycosaminoglycan catabolic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008360 regulation of cell shape IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009253 peptidoglycan catabolic process IEP Enrichment
BP GO:0015936 coenzyme A metabolic process IEP Enrichment
BP GO:0015937 coenzyme A biosynthetic process IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016846 carbon-sulfur lyase activity IEP Enrichment
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Enrichment
BP GO:0022604 regulation of cell morphogenesis IEP Enrichment
BP GO:0030203 glycosaminoglycan metabolic process IEP Enrichment
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
MF GO:0043768 S-ribosylhomocysteine lyase activity IEP Enrichment
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
BP GO:0050793 regulation of developmental process IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
BP GO:0055065 metal ion homeostasis IEP Enrichment
BP GO:0055070 copper ion homeostasis IEP Enrichment
BP GO:0055076 transition metal ion homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001653 DAP_epimerase_DapF 5 125
IPR001653 DAP_epimerase_DapF 154 268
No external refs found!