KNA54974 (VCV51_033157)

Aliases : VCV51_033157

Description : ribosomal protein L23 [Ensembl]. Ribosomal protein L23 [Interproscan].

Gene families : OG_02_0000400 (OrthoFinder) Phylogenetic Tree(s): OG0000400_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: KNA54974
Cluster	HCCA: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
AAC76343	rplW, b3318	50S ribosomal subunit protein L23 [Ensembl]. Ribosomal...	0.28	OrthoFinder
AAK98994	spr0190, rplW	50S Ribosomal protein L23 [Ensembl]. Ribosomal protein...	0.24	OrthoFinder
AAL22301	STM3438, rplW	50S ribosomal subunit protein L23 [Ensembl]. Ribosomal...	0.3	OrthoFinder
ADK86872	rplW, MPNE_0196	ribosomal protein L23 [Ensembl]. Ribosomal protein L23...	0.15	OrthoFinder
AEA92840	rplW, OG1RF_10153	50S ribosomal protein L23 [Ensembl]. Ribosomal protein...	0.19	OrthoFinder
AGT22246	N559_0436	rpL23-SA fusion protein [Ensembl].	0.15	OrthoFinder
AHY40890	rplW, CJ8421_08590	50S ribosomal protein L23 [Ensembl]. Ribosomal protein...	0.23	OrthoFinder
AKI50565	rplW, L2625_02775	ribosomal protein L23 [Ensembl]. Ribosomal protein...	0.04	OrthoFinder
AKP15125	rplW, WX61_01071	50S ribosomal protein L23 [Ensembl]. Ribosomal protein...	0.07	OrthoFinder
CBI65719	rplW, HPB8_162	large subunit ribosomal protein L23 [Ensembl]. Ribosomal...	0.22	OrthoFinder
CCG27381	L23Ae	LSU ribosomal protein L23p (L23Ae) [Ensembl]. Ribosomal...	0.23	OrthoFinder
CCL20565	rplW, BN171_70005	50S ribosomal protein L23 [Ensembl]. Ribosomal protein...	0.2	OrthoFinder
CCP43447	rplW, Rv0703	50S ribosomal protein L23 RplW [Ensembl]. Ribosomal...	0.16	OrthoFinder
CPD13571	rplW, ERS093114_02124	50S ribosomal protein L23 [Ensembl]. Ribosomal protein...	0.23	OrthoFinder
CRO73798	rplW	50S ribosomal protein L23 [Ensembl]. Ribosomal protein...	0.2	OrthoFinder
EDJ91356	rplW, CGSHi22421_04613	50S ribosomal protein L23 [Ensembl]. Ribosomal protein...	0.27	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003697	single-stranded DNA binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Enrichment
MF	GO:0004810	tRNA adenylyltransferase activity	IEP	Enrichment
MF	GO:0005096	GTPase activator activity	IEP	Enrichment
MF	GO:0005488	binding	IEP	Enrichment
CC	GO:0005840	ribosome	IEP	Enrichment
BP	GO:0006323	DNA packaging	IEP	Enrichment
MF	GO:0008047	enzyme activator activity	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0019239	deaminase activity	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0030261	chromosome condensation	IEP	Enrichment
MF	GO:0030695	GTPase regulator activity	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
CC	GO:0043228	non-membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Enrichment
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Enrichment
MF	GO:0070566	adenylyltransferase activity	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment
MF	GO:1990817	RNA adenylyltransferase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013025	Ribosomal_L25/23	9	95

External Links

No external refs found!

KNA54974 (VCV51_033157)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation