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  5. KNA55290

KNA55290 (VCV51_033103)


Aliases : VCV51_033103

Description : ABC transporter ATP-binding protein [Ensembl]. ABC transporter C-terminal domain [Interproscan].


Gene families : OG_02_0000030 (OrthoFinder) Phylogenetic Tree(s): OG0000030_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA55290
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAC73907 ybiT, b0820 ABC-F family putative regulatory ATPase [Ensembl]. ABC... 0.05 OrthoFinder
AAC74035 uup, b0949 replication regulatory ABC-F family DNA-binding ATPase... 0.06 OrthoFinder
AAK99482 spr0678, ABC-NBD ABC transporter ATP-binding protein-unknown substrate... 0.05 OrthoFinder
AAL00216 spr1412, ABC-NBD ABC transporter ATP-binding protein-unknown substrate... 0.04 OrthoFinder
AAL19774 STM0838, ybiT putative ATPase component of ABC transporter with... 0.03 OrthoFinder
AAL22322 STM3459, yheS putative ATPase component of ABC transporter [Ensembl].... 0.05 OrthoFinder
AEA93888 msrA, OG1RF_11201 ABC superfamily ATP binding cassette transporter, ABC... 0.01 OrthoFinder
AGT22228 N559_0416 putative ABC transporter ATP-binding protein [Ensembl].... 0.04 OrthoFinder
AGT24961 N559_3303 ABC transporter ATPase component [Ensembl]. ABC... 0.04 OrthoFinder
AGT26049 N559_4444 putative ABC transporter ATP-binding protein [Ensembl].... 0.06 OrthoFinder
AKI49428 L2625_01529 ABC transporter, ATP-binding protein [Ensembl]. ABC... 0.03 OrthoFinder
AKI49870 uup, L2625_02017 ABC transporter, ATP-binding protein [Ensembl]. ABC... 0.04 OrthoFinder
AKI50068 L2625_02223 ABC transporter, ATP-binding protein [Ensembl]. ABC... 0.03 OrthoFinder
AKI50697 L2625_02912 ABC transporter, ATP-binding protein [Ensembl]. ABC... 0.04 OrthoFinder
AKP16088 uup_1, WX61_02062 ABC transporter ATP-binding protein uup [Ensembl]. ABC... 0.03 OrthoFinder
AKP16164 yheS, WX61_02140 putative ABC transporter ATP-binding protein YheS... 0.04 OrthoFinder
AKP16180 uup_2, WX61_02156 ABC transporter ATP-binding protein uup [Ensembl]. ABC... 0.05 OrthoFinder
CCG26162 No alias COG0488: ATPase components of ABC transporters with... 0.03 OrthoFinder
CCG26385 No alias ABC transporter ATP-binding protein uup [Ensembl]. ABC... 0.03 OrthoFinder
CCG26528 No alias ABC transporter ATP-binding protein [Ensembl]. ABC... 0.02 OrthoFinder
CCL19055 BN171_2840003 ABC-type transport system,pristinamycin/multidrug-family... 0.03 OrthoFinder
CPD07676 yheS_2, ERS093114_02000 ABC transporter ATP-binding protein [Ensembl]. ABC... 0.05 OrthoFinder
CRN86127 yheS_1 putative ABC transporter ATP-binding protein YheS... 0.03 OrthoFinder
CRO90899 uup ABC transporter ATP-binding protein uup [Ensembl]. ABC... 0.03 OrthoFinder
CRP46393 yheS_2 putative ABC transporter ATP-binding protein YheS... 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009271 phage shock IEP Enrichment
CC GO:0009360 DNA polymerase III complex IEP Enrichment
MF GO:0009378 four-way junction helicase activity IEP Enrichment
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0009615 response to virus IEP Enrichment
BP GO:0015833 peptide transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
BP GO:0042886 amide transport IEP Enrichment
BP GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly IEP Enrichment
BP GO:0043207 response to external biotic stimulus IEP Enrichment
BP GO:0043213 bacteriocin transport IEP Enrichment
MF GO:0045301 tRNA-(2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine)-hydroxylase activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051707 response to other organism IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0070206 protein trimerization IEP Enrichment
BP GO:0071709 membrane assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0098586 cellular response to virus IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR032524 ABC_tran_C 564 632
IPR003439 ABC_transporter-like_ATP-bd 336 469
IPR003439 ABC_transporter-like_ATP-bd 19 185
IPR032781 ABC_tran_Xtn 224 299
No external refs found!