KNA56407 (VCV51_030679)

Aliases : VCV51_030679

Description : DNA ligase [Ensembl]. Helix-hairpin-helix motif, Helix-hairpin-helix domain, BRCA1 C Terminus (BRCT) domain, NAD-dependent DNA ligase OB-fold domain, NAD-dependent DNA ligase adenylation domain, NAD-dependent DNA ligase C4 zinc finger domain [Interproscan].

Gene families : OG_02_0000445 (OrthoFinder) Phylogenetic Tree(s): OG0000445_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: KNA56407
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAK99828 spr1024, ligA DNA ligase [Ensembl]. Helix-hairpin-helix motif,... 0.03 OrthoFinder
ADK87023 ligA, MPNE_0413 DNA ligase (NAD(+)) [Ensembl]. NAD-dependent DNA ligase... 0.02 OrthoFinder
AGT23252 N559_1499, LigA NAD-dependent DNA ligase LigA [Ensembl]. NAD-dependent... 0.04 OrthoFinder
AHY39823 ligA, CJ8421_02860 NAD-dependent DNA ligase LigA [Ensembl].... 0.03 OrthoFinder
AKI49752 ligA, L2625_01894 DNA ligase, NAD-dependent [Ensembl]. NAD-dependent DNA... 0.04 OrthoFinder
AKP15609 ligA_2, WX61_01570 DNA ligase [Ensembl]. Helix-hairpin-helix motif, BRCA1 C... 0.03 OrthoFinder
CPD03240 lig, ERS093114_01872 DNA ligase [Ensembl]. Helix-hairpin-helix motif,... 0.03 OrthoFinder
EDJ91896 ligA, CGSHi22421_09073 NAD-dependent DNA ligase LigA [Ensembl].... 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003911 DNA ligase (NAD+) activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008144 drug binding IEP Enrichment
MF GO:0008658 penicillin binding IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
CC GO:0009360 DNA polymerase III complex IEP Enrichment
MF GO:0009378 four-way junction helicase activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0033293 monocarboxylic acid binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
BP GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
MF GO:0070567 cytidylyltransferase activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071709 membrane assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001357 BRCT_dom 597 666
IPR004149 Znf_DNAligase_C4 407 434
IPR013839 DNAligase_adenylation 4 318
IPR004150 NAD_DNA_ligase_OB 322 398
IPR041663 DisA/LigA_HHH 510 573
No external refs found!