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  5. KNA56953

KNA56953 (VCV51_032886)


Aliases : VCV51_032886

Description : SsrA-binding protein [Ensembl]. SmpB protein [Interproscan].


Gene families : OG_02_0000546 (OrthoFinder) Phylogenetic Tree(s): OG0000546_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA56953
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAC75669 smpB, b2620 tmRNA-binding trans-translation protein [Ensembl]. SmpB... 0.03 OrthoFinder
EDJ91778 smpB, CGSHi22421_08483 SsrA-binding protein [Ensembl]. SmpB protein [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0004529 exodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008852 exodeoxyribonuclease I activity IEP Enrichment
MF GO:0008990 rRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
CC GO:0009360 DNA polymerase III complex IEP Enrichment
MF GO:0009378 four-way junction helicase activity IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
BP GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
MF GO:0048472 threonine-phosphate decarboxylase activity IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071709 membrane assembly IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000037 SsrA-bd_prot 15 157
No external refs found!