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  5. KNA58949

KNA58949 (VCV51_031249)


Aliases : VCV51_031249

Description : AraC family Bacterial regulatory helix-turn-helix protein [Ensembl]. Helix-turn-helix domain [Interproscan].


Gene families : OG_02_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA58949
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAC77349 rob, b4396 right oriC-binding transcriptional activator, AraC... 0.04 OrthoFinder
AAL23401 STM4586, rob transcriptional regulator [Ensembl]. Helix-turn-helix... 0.02 OrthoFinder
AEA94354 OG1RF_11667 AraC family transcriptional regulator [Ensembl].... 0.03 OrthoFinder
AGT24051 N559_2350 putative AraC-type trancriptional regulator [Ensembl].... 0.04 OrthoFinder
CCL17275 BN171_1430002 Transcriptional regulator, AraC family [Ensembl].... 0.03 OrthoFinder
CCL19667 BN171_3370001 Transcriptional regulator, AraC family [Ensembl].... 0.03 OrthoFinder
CCL19921 BN171_360015 Transcriptional regulator, AraC family [Ensembl].... 0.03 OrthoFinder
CPC99917 btr, ERS093114_01825 AraC family transcriptional regulator [Ensembl].... 0.04 OrthoFinder
CRO70395 pchR_1 Regulatory protein PchR [Ensembl]. Helix-turn-helix... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009271 phage shock IEP Enrichment
CC GO:0009360 DNA polymerase III complex IEP Enrichment
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0009615 response to virus IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
BP GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly IEP Enrichment
BP GO:0043207 response to external biotic stimulus IEP Enrichment
BP GO:0043213 bacteriocin transport IEP Enrichment
MF GO:0045301 tRNA-(2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine)-hydroxylase activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051707 response to other organism IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0071709 membrane assembly IEP Enrichment
BP GO:0098586 cellular response to virus IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR018060 HTH_AraC 199 277
No external refs found!