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  5. KNA59439

KNA59439 (VCV51_031273, MsbA)


Aliases : VCV51_031273, MsbA

Description : lipid A export permease/ATP-binding protein MsbA [Ensembl]. ABC transporter transmembrane region [Interproscan].


Gene families : OG_02_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA59439
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AAC74000 msbA, b0914 lipid ABC transporter permease/ATPase [Ensembl]. ABC... 0.08 OrthoFinder
AAL00019 spr1215, ABC-N/P ABC transporter ATP-binding/membrane-spanning... 0.03 OrthoFinder
AAL00020 spr1216, ABC-N/P ABC transporter ATP-binding/membrane-spanning... 0.04 OrthoFinder
AAL00460 spr1657, ABC-N/P ABC transporter ATP-binding/membrane spanning... 0.03 OrthoFinder
AAL19918 STM0984, msbA multicopy repressor of htrB transport protein; ABC... 0.07 OrthoFinder
AEA94129 mdlB, OG1RF_11442 multidrug ABC superfamily ATP binding cassette... 0.01 OrthoFinder
AEA94130 mdlA, OG1RF_11443 multidrug ABC superfamily ATP binding cassette... 0.01 OrthoFinder
AEA94907 mdlB2, OG1RF_12220 multidrug ABC superfamily ATP binding cassette... 0.03 OrthoFinder
AGT24993 N559_3337 lipid transporter ATP-binding/permease protein... 0.05 OrthoFinder
AKI48785 L2625_00857 ABC transporter, ATP-binding/permease protein [Ensembl].... 0.04 OrthoFinder
AKP14872 WX61_00805 Putative multidrug export ATP-binding/permease protein... 0.03 OrthoFinder
AKP15308 msbA, WX61_01259 Lipid A export ATP-binding/permease protein MsbA... 0.03 OrthoFinder
CCG27595 No alias Putative ABC transporter (ATP-binding protein),spy1791... 0.02 OrthoFinder
CCL18600 BN171_2440041 ABC-type transport system, multidrug-family... 0.04 OrthoFinder
CCL18601 BN171_2440042 ABC-type transport system, multidrug-family... 0.04 OrthoFinder
CRO55966 msbA Lipid A export ATP-binding/permease protein MsbA... 0.06 OrthoFinder
EDJ91217 CGSHi22421_01824 fused lipid transporter subunits of ABC superfamily:... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016887 ATPase IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005886 plasma membrane IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
CC GO:0009317 acetyl-CoA carboxylase complex IEP Enrichment
MF GO:0009378 four-way junction helicase activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
MF GO:0050380 undecaprenyl-diphosphatase activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0070206 protein trimerization IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
BP GO:0071709 membrane assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 359 509
IPR011527 ABC1_TM_dom 28 293
No external refs found!