KNA60578 (VCV51_032249)

Aliases : VCV51_032249

Description : AraC family Bacterial regulatory helix-turn-helix protein [Ensembl]. Helix-turn-helix domain, AraC-like ligand binding domain [Interproscan].

Gene families : OG_02_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: KNA60578
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AAC76936 yijO, b3954 AraC family putative transcriptional activator... 0.03 OrthoFinder
AAL22956 STM4117, yijO putative AraC/XylS family regulator [Ensembl].... 0.03 OrthoFinder
AAL23401 STM4586, rob transcriptional regulator [Ensembl]. Helix-turn-helix... 0.04 OrthoFinder
AEA93832 OG1RF_11145 AraC family transcriptional regulator [Ensembl].... 0.03 OrthoFinder
AGT24051 N559_2350 putative AraC-type trancriptional regulator [Ensembl].... 0.04 OrthoFinder
AGT24370 N559_2694, MarA DNA-binding transcriptional activator MarA [Ensembl].... 0.02 OrthoFinder
CCL17275 BN171_1430002 Transcriptional regulator, AraC family [Ensembl].... 0.05 OrthoFinder
CCL18283 BN171_220035 Transcriptional regulator, AraC family [Ensembl].... 0.03 OrthoFinder
CCL18309 BN171_2210009 Transcriptional regulator, AraC family [Ensembl].... 0.04 OrthoFinder
CCL19667 BN171_3370001 Transcriptional regulator, AraC family [Ensembl].... 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0009235 cobalamin metabolic process IEP Enrichment
BP GO:0009236 cobalamin biosynthetic process IEP Enrichment
BP GO:0015858 nucleoside transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0034258 nicotinamide riboside transport IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
InterPro domains Description Start Stop
IPR003313 AraC-bd 44 153
IPR018060 HTH_AraC 203 282
No external refs found!