KNA60578 (VCV51_032249)

Aliases : VCV51_032249

Description : AraC family Bacterial regulatory helix-turn-helix protein [Ensembl]. Helix-turn-helix domain, AraC-like ligand binding domain [Interproscan].

Gene families : OG_02_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: KNA60578
Cluster	HCCA: Cluster_29

Target	Alias	Description	ECC score	Gene Family Method
AAC76936	yijO, b3954	AraC family putative transcriptional activator...	0.03	OrthoFinder
AAL22956	STM4117, yijO	putative AraC/XylS family regulator [Ensembl]....	0.03	OrthoFinder
AAL23401	STM4586, rob	transcriptional regulator [Ensembl]. Helix-turn-helix...	0.04	OrthoFinder
AEA93832	OG1RF_11145	AraC family transcriptional regulator [Ensembl]....	0.03	OrthoFinder
AGT24051	N559_2350	putative AraC-type trancriptional regulator [Ensembl]....	0.04	OrthoFinder
AGT24370	N559_2694, MarA	DNA-binding transcriptional activator MarA [Ensembl]....	0.02	OrthoFinder
CCL17275	BN171_1430002	Transcriptional regulator, AraC family [Ensembl]....	0.05	OrthoFinder
CCL18283	BN171_220035	Transcriptional regulator, AraC family [Ensembl]....	0.03	OrthoFinder
CCL18309	BN171_2210009	Transcriptional regulator, AraC family [Ensembl]....	0.04	OrthoFinder
CCL19667	BN171_3370001	Transcriptional regulator, AraC family [Ensembl]....	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008134	transcription factor binding	IEP	Enrichment
BP	GO:0009235	cobalamin metabolic process	IEP	Enrichment
BP	GO:0009236	cobalamin biosynthetic process	IEP	Enrichment
BP	GO:0015858	nucleoside transport	IEP	Enrichment
BP	GO:0015931	nucleobase-containing compound transport	IEP	Enrichment
BP	GO:0032324	molybdopterin cofactor biosynthetic process	IEP	Enrichment
BP	GO:0034258	nicotinamide riboside transport	IEP	Enrichment
BP	GO:1901264	carbohydrate derivative transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003313	AraC-bd	44	153
IPR018060	HTH_AraC	203	282

External Links

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KNA60578 (VCV51_032249)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation