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AEA95135 (OG1RF_12448)


Aliases : OG1RF_12448

Description : RNA polymerase sigma-70 factor [Ensembl]. Sigma-70 region 2 [Interproscan].


Gene families : OG_02_0000184 (OrthoFinder) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AEA95135
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AKI48382 sigC, L2625_00438 RNA polymerase sigma-C factor [Ensembl]. RNA polymerase... 0.01 OrthoFinder
CCL17760 sigV, BN171_1770004 RNA polymerase sigma-70 factor [Ensembl]. Sigma-70,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR013249 RNA_pol_sigma70_r4_t2 108 159
IPR007627 RNA_pol_sigma70_r2 22 85
No external refs found!