AEA95241 (srlM, OG1RF_12554)

Aliases : srlM, OG1RF_12554

Description : putative transcriptional activator SrlM [Ensembl]. HTH domain, PRD domain, Phosphoenolpyruvate-dependent sugar phosphotransferase system [Interproscan].

Gene families : OG_02_0000208 (OrthoFinder) Phylogenetic Tree(s): OG0000208_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AEA95241
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
AAK99083	spr0279, bglG	Transcription antiterminator BglG family [Ensembl]. HTH...	0.06	OrthoFinder
AKI48268	L2625_00321	transcriptional antiterminator [Ensembl]. Mga...	0.07	OrthoFinder
AKI48362	L2625_00417	transcriptional antiterminator [Ensembl]. PTS EIIA...	0.05	OrthoFinder
AKI48384	L2625_00440	transcriptional antiterminator [Ensembl]. PRD domain,...	0.03	OrthoFinder
AKI48866	L2625_00944	transcriptional antiterminator, BglG family [Ensembl]....	0.04	OrthoFinder
CCG26679	No alias	Transcriptional antiterminator of lichenan operon, BglG...	0.05	OrthoFinder
CCL18826	BN171_2670008	Transcription antiterminator, PTS operon regulator...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Enrichment
CC	GO:0005737	cytoplasm	IEP	Enrichment
BP	GO:0005975	carbohydrate metabolic process	IEP	Enrichment
BP	GO:0006063	uronic acid metabolic process	IEP	Enrichment
BP	GO:0006064	glucuronate catabolic process	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
BP	GO:0008643	carbohydrate transport	IEP	Enrichment
MF	GO:0008927	mannonate dehydratase activity	IEP	Enrichment
MF	GO:0008982	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	IEP	Enrichment
BP	GO:0009401	phosphoenolpyruvate-dependent sugar phosphotransferase system	IEP	Enrichment
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	Enrichment
BP	GO:0016054	organic acid catabolic process	IEP	Enrichment
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Enrichment
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Enrichment
BP	GO:0019585	glucuronate metabolic process	IEP	Enrichment
MF	GO:0022804	active transmembrane transporter activity	IEP	Enrichment
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Enrichment
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	Enrichment
BP	GO:0044282	small molecule catabolic process	IEP	Enrichment
BP	GO:0046395	carboxylic acid catabolic process	IEP	Enrichment
MF	GO:0046992	oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond	IEP	Enrichment
MF	GO:0050485	oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051191	prosthetic group biosynthetic process	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Enrichment
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002178	PTS_EIIA_type-2_dom	493	608
IPR013196	HTH_11	90	147
IPR013196	HTH_11	6	51
IPR011608	PRD	282	369

External Links

No external refs found!

AEA95241 (srlM, OG1RF_12554)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation