1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_39 (HCCA)

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

 Transpose table  Download table
Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL18966 (thrA)
 54.15 84.43 117.89 51.58 18.26 89.56 14.04 334.05 44.49 56.63 80.66 17.46 85.41 577.31 19.91 24.72 7.57 72.09 132.32 97.66 22.49 26.75 6.06 53.35 38.04 133.77 25.55 216.99 145.22 2.59 22.63 27.24 96.63 5.0 6.7 17.89 88.85 88.84 30.56
AAL18967 (thrB)
 165.82 194.1 210.19 112.15 63.48 240.61 87.14 522.13 76.75 108.34 89.39 47.12 168.13 868.4 80.0 141.75 45.39 167.77 194.51 193.71 610.86 553.54 30.88 75.84 350.93 233.33 67.17 284.47 247.75 8.03 95.13 79.9 176.22 35.42 32.76 66.31 99.73 180.03 82.27
AAL18968 (thrC)
 145.47 204.91 191.73 181.16 74.88 367.63 103.73 559.36 85.33 110.16 88.46 92.76 153.86 995.97 160.35 117.13 62.57 216.74 243.41 305.66 496.32 265.3 25.11 71.73 300.46 260.91 84.91 318.6 433.57 9.03 80.48 78.33 271.37 26.45 45.2 62.81 96.07 148.65 101.76
AAL19074 (leuD)
 77.3 51.65 45.11 63.2 17.36 309.23 11.76 265.68 14.99 17.41 16.73 8.24 33.98 279.96 20.35 20.57 7.88 11.69 18.04 19.4 18.29 38.06 9.66 39.18 17.82 70.25 20.99 24.98 167.61 3.0 7.53 22.75 125.06 5.35 7.58 15.73 85.31 33.87 26.58
AAL19075 (leuC)
 48.83 48.35 43.44 58.43 12.64 315.79 8.39 260.61 12.99 15.46 11.56 7.91 32.58 270.1 15.32 5.96 3.32 11.09 21.99 17.81 10.69 28.43 1.88 29.51 20.91 80.32 23.46 32.41 156.54 1.79 5.67 18.84 132.14 0.85 3.89 14.47 62.63 30.98 22.0
AAL19076 (leuB)
 59.93 50.16 37.92 59.88 13.34 181.56 10.27 224.47 14.77 19.24 15.74 6.92 36.23 222.13 13.63 11.92 3.24 12.65 23.25 19.49 14.43 36.65 6.48 26.97 37.55 80.47 22.06 35.75 163.15 2.78 10.61 22.53 135.35 3.38 3.47 14.2 73.91 29.75 29.61
AAL19077 (leuA)
 56.86 31.1 22.03 24.0 4.85 80.98 9.82 136.5 11.31 7.75 18.65 2.71 21.51 179.01 14.18 12.24 4.63 29.55 52.17 38.62 10.13 12.73 4.81 35.3 53.18 42.11 16.66 40.64 52.52 1.06 7.24 13.64 51.15 2.48 6.37 9.67 104.12 11.18 21.88
AAL19114 (aroP)
 29.47 72.4 41.24 43.72 16.79 101.31 12.06 204.94 20.38 19.79 26.3 23.01 38.94 240.75 25.92 18.02 15.05 23.28 18.64 28.2 20.3 45.31 7.43 33.43 35.4 29.35 29.48 15.78 132.68 3.52 12.05 18.73 166.13 10.45 10.36 15.38 62.01 22.96 35.01
AAL19208 (yaeC)
 195.47 300.27 228.84 258.9 129.63 819.15 462.88 580.36 102.19 146.48 84.0 74.1 210.03 1089.54 269.04 178.7 221.81 138.51 127.7 157.04 160.06 405.78 182.58 190.04 173.55 347.6 244.97 211.82 420.42 39.23 68.21 241.56 376.76 108.01 186.58 126.05 308.61 182.59 215.08
AAL19209 (yaeE)
 36.47 68.35 31.84 35.05 13.81 36.39 66.79 189.54 39.13 15.9 33.47 38.22 27.81 427.85 29.94 21.75 15.16 26.02 23.88 29.66 36.05 74.71 13.51 82.99 37.59 55.66 44.88 39.67 49.92 15.45 20.05 29.35 74.59 13.42 17.49 26.87 130.35 30.48 18.92
AAL19210 (abc)
 37.53 53.44 21.38 34.89 8.56 30.55 44.45 166.56 84.46 20.48 104.67 43.1 20.38 336.89 17.11 26.28 12.83 13.85 13.68 17.22 40.24 96.01 19.07 42.01 42.6 60.95 38.0 51.03 71.13 16.54 20.58 17.94 125.69 16.14 18.53 25.67 66.41 13.42 15.3
AAL19553 (ybdH)
 16.46 52.8 62.28 25.9 18.52 43.55 19.38 175.15 33.87 17.38 47.09 7.76 50.74 384.46 9.53 22.49 12.37 30.85 30.46 42.07 48.07 125.3 7.82 36.59 50.24 19.73 13.21 27.35 55.23 3.76 23.81 17.51 91.82 13.83 45.12 8.68 46.74 27.48 14.86
AAL19554 (ybdL)
 14.85 45.86 17.81 31.59 6.86 61.0 21.45 176.71 22.58 11.02 37.86 13.41 16.49 463.43 12.79 28.14 10.09 11.4 11.38 13.77 104.46 92.27 14.67 53.52 109.84 25.19 33.71 26.81 65.48 3.96 19.52 12.09 114.62 14.62 28.94 25.0 103.87 7.85 11.13
AAL19859 (STM0923)
 0.74 0.0 0.0 0.0 0.0 0.0 0.0 16.48 0.0 0.0 0.0 0.0 0.0 23.59 0.0 0.0 2.21 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.78 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.28 0.0 0.0 0.0 0.0
AAL19933 (ompF)
 1175.86 487.22 2567.32 567.27 2653.79 216.0 37.54 2655.37 548.23 233.98 479.9 90.12 1022.36 6105.9 97.25 498.52 782.89 76.41 58.72 85.35 28.14 608.13 279.56 254.6 87.47 1200.42 518.72 36.22 938.18 23.39 26.84 1013.85 898.76 56.45 158.29 33.86 696.3 4594.15 233.5
AAL20694 (ipk)
 71.15 84.86 95.57 73.18 159.35 80.42 31.06 276.23 102.54 109.86 107.55 69.64 121.77 507.37 40.36 30.48 17.2 31.18 57.69 37.52 37.27 55.1 29.92 56.64 28.21 105.85 81.78 114.0 82.96 37.58 76.42 137.71 90.63 29.49 18.37 73.69 59.56 152.8 189.01
AAL21097 (folE)
 95.43 105.33 412.58 120.56 68.31 42.65 86.99 219.55 68.14 68.67 71.13 87.26 639.65 1088.85 42.72 63.32 27.37 108.22 115.51 128.91 40.29 54.29 57.09 87.71 70.47 137.56 110.24 156.62 284.51 13.0 80.49 489.56 290.53 57.42 42.72 90.98 119.14 165.76 529.54
AAL21937 (serA)
 169.02 226.08 56.44 194.23 29.65 870.62 227.5 920.92 36.08 66.1 44.85 32.37 47.54 3037.85 114.89 54.54 51.29 108.6 121.47 111.89 51.94 223.41 27.94 61.0 245.89 99.8 80.43 73.69 427.38 9.19 48.68 45.45 598.51 24.73 53.65 42.97 111.58 52.72 65.61
AAL21965 (metK)
 155.68 218.79 55.91 187.31 31.75 294.06 558.18 960.08 262.59 67.41 328.44 253.93 71.47 1653.82 103.5 105.23 70.24 114.87 105.06 120.04 132.04 298.73 44.91 214.45 143.59 326.71 218.55 214.2 298.84 85.02 212.8 70.5 359.97 44.16 63.99 216.69 189.33 55.17 42.09
AAL22035 (metC)
 18.61 45.59 34.08 28.86 10.33 52.08 27.61 103.3 16.68 21.45 20.41 11.88 30.24 215.53 23.4 19.98 9.12 20.77 19.16 23.96 31.68 39.05 13.62 53.03 47.59 30.47 24.2 31.97 49.28 2.6 15.78 20.76 54.47 13.91 14.78 17.39 97.45 18.07 21.88
AAL22199 (gltB)
 47.91 81.21 19.57 71.97 11.7 131.4 21.89 610.41 20.31 14.55 16.59 20.34 16.4 930.37 15.44 19.09 8.97 16.32 23.79 19.12 32.35 44.79 6.08 43.23 26.61 66.28 46.89 20.99 205.03 2.48 15.6 20.7 201.41 3.29 12.42 18.98 81.56 20.18 19.06
AAL22200 (gltD)
 75.52 98.75 28.51 97.33 19.98 308.74 30.25 705.91 24.96 16.98 18.41 23.17 23.16 992.39 22.35 27.68 11.9 16.27 22.67 21.11 47.71 51.27 7.39 56.15 23.44 72.02 53.86 22.39 235.13 3.92 18.02 37.34 222.78 5.26 14.86 24.42 105.73 25.64 26.62
AAL22427 (livJ)
 112.59 36.86 23.36 47.91 7.17 466.31 6.92 394.53 24.87 12.75 56.97 12.78 14.78 134.88 17.97 5.45 24.02 10.37 10.02 11.63 12.4 20.92 2.52 34.38 19.74 19.73 20.94 12.55 77.5 2.56 5.95 11.7 45.0 2.02 47.15 14.89 78.7 11.1 15.48
AAL22469 (yhjE)
 17.85 44.3 29.04 18.52 7.1 44.87 8.96 189.46 9.14 7.87 19.21 4.06 33.36 300.78 6.45 8.99 6.31 13.04 13.69 15.24 13.48 26.66 1.64 25.51 52.76 15.48 7.66 12.82 55.87 1.41 8.33 10.14 54.97 5.4 19.18 6.5 54.34 14.08 13.01
AAL22486 (yhjV)
 29.52 48.06 12.34 8.43 10.09 3.41 16.11 179.8 21.45 4.8 41.28 13.23 31.97 461.76 15.9 13.26 13.13 13.6 15.28 18.48 3.78 9.0 15.99 77.58 7.73 19.47 15.54 12.16 9.53 6.41 3.6 6.09 10.6 14.0 12.03 11.96 156.4 8.53 18.22
AAL22487 (dppF)
 31.78 86.67 129.88 55.91 39.29 29.47 11.65 1060.81 20.08 17.48 26.41 24.5 183.75 2929.76 70.59 21.19 26.02 17.56 17.87 21.54 16.51 60.16 38.65 61.63 18.85 87.29 13.11 39.32 150.86 1.46 6.07 31.72 139.33 10.96 32.95 6.36 85.71 53.45 111.41
AAL22488 (dppD)
 34.72 105.29 144.16 60.74 51.73 31.12 7.47 1194.4 14.96 21.25 15.04 27.69 215.6 3474.99 36.88 36.49 18.67 13.96 13.21 16.96 17.04 81.82 63.14 66.74 25.04 123.55 12.35 61.87 187.09 1.66 8.18 43.78 162.49 20.32 21.92 5.2 85.23 65.52 197.75
AAL22489 (dppC)
 22.53 99.92 79.54 40.23 31.54 13.61 5.32 904.55 9.72 13.87 10.83 20.6 134.72 2872.35 12.86 13.43 5.06 6.29 7.4 8.28 13.42 91.66 12.83 68.56 43.53 109.52 11.38 34.11 136.44 2.51 7.86 32.68 124.44 5.56 5.96 6.73 84.48 36.24 161.15
AAL22490 (dppB)
 31.12 76.7 72.64 45.7 44.13 9.26 6.6 954.79 8.63 11.4 11.31 14.16 188.24 3127.72 18.58 25.96 11.2 14.95 13.45 14.78 14.64 63.65 31.1 69.56 94.73 85.28 9.61 42.06 144.56 2.44 11.22 60.2 127.61 14.04 14.0 5.04 91.92 42.31 242.98
AAL22491 (dppA)
 166.39 235.51 596.38 156.12 227.15 150.11 33.95 3244.11 25.85 64.12 20.79 22.44 1106.46 8932.6 181.34 274.51 72.07 119.42 109.23 138.52 113.03 330.53 270.19 160.36 473.22 201.42 24.91 183.97 302.13 3.87 56.3 328.95 276.43 223.93 54.03 8.83 248.12 344.93 866.89
AAL22524 (avtA)
 41.55 46.63 8.7 26.88 14.75 41.3 68.09 200.96 13.49 16.7 24.74 54.27 15.38 331.75 50.05 11.42 36.07 21.02 25.57 25.41 11.57 19.95 10.09 49.8 19.48 73.8 41.63 17.82 32.86 6.04 12.86 17.33 29.51 7.92 163.06 46.59 78.11 14.04 31.09
AAL22751 (ilvG)
 35.12 44.84 50.98 72.46 9.27 39.39 9.14 248.61 18.48 16.22 29.19 4.43 45.71 569.7 15.3 26.78 16.88 18.72 28.92 22.92 12.87 32.61 4.03 31.87 43.59 59.99 15.46 95.71 237.01 2.12 7.72 10.68 173.58 6.62 16.31 10.82 74.71 64.7 11.84
AAL22752 (ilvM)
 100.41 77.69 276.54 84.96 40.38 238.4 25.66 754.07 34.1 61.69 43.52 6.57 213.33 1279.51 13.22 192.13 18.12 12.01 20.07 17.01 35.92 69.1 20.86 71.98 34.28 104.31 33.31 136.18 311.68 3.84 12.11 29.19 245.75 28.16 34.13 30.75 165.78 414.48 31.36
AAL22753 (ilvE)
 40.89 99.32 79.62 106.03 34.85 124.27 44.18 413.15 50.49 92.35 57.78 38.99 79.61 1015.56 42.08 109.97 28.07 23.74 27.67 32.16 45.03 78.38 33.69 74.4 33.14 129.06 115.9 119.41 363.31 3.81 24.4 37.96 281.69 20.2 40.71 88.5 121.41 137.85 49.44
AAL22754 (ilvD)
 51.35 82.59 86.13 127.53 36.96 108.65 27.59 487.63 36.63 58.44 30.0 31.29 94.58 1122.26 67.38 49.2 20.41 27.74 30.3 34.91 28.92 64.72 12.74 44.34 23.01 124.18 48.93 93.13 322.31 5.94 22.91 26.74 280.14 8.88 18.86 27.72 76.43 77.94 36.89
AAL22755 (ilvA)
 66.7 77.36 59.59 89.27 31.0 121.46 18.54 397.24 31.52 49.92 33.38 29.88 69.61 892.21 31.48 31.91 20.02 16.0 17.95 20.52 29.82 68.7 9.13 34.57 18.98 102.3 37.12 55.56 237.33 25.26 24.12 20.32 188.93 6.94 18.12 23.15 58.17 54.29 28.16
AAL22808 (metR)
 18.09 26.82 12.06 19.43 2.32 16.15 4.75 58.87 17.6 5.2 26.68 4.94 8.51 188.5 2.59 3.3 3.19 3.97 3.19 5.15 23.23 33.01 0.5 23.81 29.51 20.65 20.17 18.35 41.72 1.68 7.74 4.93 63.05 0.53 8.92 9.71 45.97 6.69 5.68
AAL22809 (metE)
 164.14 71.91 16.0 237.54 4.74 906.69 23.62 1500.33 13.62 11.05 19.96 5.58 13.71 7367.33 8.09 5.41 6.71 9.69 8.29 10.99 19.52 18.29 1.73 31.42 13.65 14.4 11.34 110.82 777.08 2.52 11.66 10.97 665.66 2.78 9.61 12.03 55.26 8.53 8.34
AAL22940 (metB)
 30.33 49.36 14.82 38.72 17.77 35.17 53.34 109.68 41.73 23.4 63.8 35.95 18.44 454.55 61.16 10.89 56.92 67.91 44.0 66.64 48.95 32.22 8.39 70.68 47.55 37.08 55.15 26.09 63.76 8.19 13.91 16.72 121.61 4.31 50.07 35.48 124.74 21.49 23.78
AAL22941 (metL)
 31.49 43.84 30.3 47.36 19.22 30.18 18.82 139.07 51.49 27.08 59.57 52.67 23.05 887.02 20.37 9.05 24.16 20.57 22.18 24.04 38.42 39.72 7.7 40.1 31.56 49.14 51.06 29.57 100.41 9.85 12.17 19.06 150.7 4.89 19.97 30.41 70.2 36.45 22.94
AAL22942 (STM4102)
 22.6 28.93 8.03 7.16 6.0 4.69 8.21 36.03 12.69 5.29 26.59 3.68 9.93 205.38 6.92 4.77 11.48 7.39 7.12 9.77 5.96 5.74 2.18 3.7 6.39 9.62 7.03 7.21 11.86 4.56 4.66 6.34 18.36 6.38 13.46 4.08 4.31 9.51 7.15
AAL22945 (metF)
 40.73 56.05 17.69 96.54 7.14 80.08 52.18 529.9 16.33 8.34 29.2 8.21 23.92 1484.16 20.29 21.19 14.51 22.27 19.72 26.8 79.63 42.1 14.25 54.95 88.78 20.92 30.02 37.17 253.31 5.05 27.34 24.46 446.92 12.8 27.7 19.95 102.22 9.38 19.28
AAL23006 (metA)
 16.78 29.46 19.29 20.41 9.93 58.69 14.56 174.49 10.22 11.41 10.88 4.11 18.98 643.28 7.94 26.24 5.89 7.44 6.67 10.24 29.52 40.08 20.62 61.3 31.84 18.68 18.48 24.52 48.39 7.19 10.99 14.44 59.39 21.06 13.11 9.64 132.17 12.53 14.92

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)