Heatmap: Cluster_39 (HCCA)

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(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL18966 (thrA)
-0.52 0.12 0.6 -0.59 -2.09 0.2 -2.47 2.1 -0.81 -0.46 0.05 -2.16 0.13 2.89 -1.97 -1.65 -3.36 -0.11 0.77 0.33 -1.79 -1.54 -3.68 -0.54 -1.03 0.78 -1.61 1.48 0.9 -4.91 -1.78 -1.51 0.31 -3.96 -3.54 -2.12 0.19 0.19 -1.35
AAL18967 (thrB)
-0.13 0.1 0.21 -0.7 -1.52 0.4 -1.06 1.52 -1.24 -0.75 -1.02 -1.95 -0.11 2.26 -1.18 -0.36 -2.0 -0.12 0.1 0.09 1.75 1.61 -2.56 -1.26 0.95 0.36 -1.44 0.65 0.45 -4.5 -0.93 -1.19 -0.04 -2.36 -2.47 -1.45 -0.87 -0.01 -1.14
AAL18968 (thrC)
-0.43 0.07 -0.03 -0.11 -1.39 0.91 -0.92 1.51 -1.2 -0.83 -1.15 -1.08 -0.35 2.35 -0.29 -0.74 -1.65 0.15 0.31 0.64 1.34 0.44 -2.96 -1.45 0.62 0.41 -1.21 0.7 1.15 -4.44 -1.28 -1.32 0.47 -2.89 -2.12 -1.64 -1.03 -0.4 -0.94
AAL19074 (leuD)
0.56 -0.03 -0.22 0.27 -1.6 2.56 -2.16 2.34 -1.81 -1.59 -1.65 -2.67 -0.63 2.41 -1.37 -1.35 -2.74 -2.17 -1.54 -1.44 -1.52 -0.47 -2.44 -0.42 -1.56 0.42 -1.32 -1.07 1.67 -4.13 -2.8 -1.21 1.25 -3.3 -2.79 -1.74 0.7 -0.63 -0.98
AAL19075 (leuC)
0.0 -0.01 -0.17 0.26 -1.95 2.7 -2.54 2.42 -1.91 -1.66 -2.08 -2.62 -0.58 2.47 -1.67 -3.03 -3.88 -2.14 -1.15 -1.45 -2.19 -0.78 -4.69 -0.72 -1.22 0.72 -1.05 -0.59 1.68 -4.76 -3.1 -1.37 1.44 -5.84 -3.65 -1.75 0.36 -0.65 -1.15
AAL19076 (leuB)
0.39 0.13 -0.27 0.39 -1.78 1.99 -2.16 2.29 -1.63 -1.25 -1.54 -2.73 -0.34 2.28 -1.75 -1.94 -3.82 -1.86 -0.98 -1.23 -1.67 -0.32 -2.82 -0.76 -0.29 0.81 -1.05 -0.36 1.83 -4.04 -2.11 -1.02 1.56 -3.76 -3.72 -1.69 0.69 -0.62 -0.63
AAL19077 (leuA)
0.82 -0.05 -0.55 -0.42 -2.73 1.33 -1.71 2.08 -1.51 -2.05 -0.79 -3.57 -0.58 2.48 -1.18 -1.4 -2.8 -0.12 0.7 0.26 -1.67 -1.34 -2.74 0.13 0.72 0.39 -0.95 0.34 0.71 -4.92 -2.15 -1.24 0.67 -3.7 -2.34 -1.73 1.69 -1.53 -0.56
AAL19114 (aroP)
-0.59 0.71 -0.1 -0.02 -1.4 1.19 -1.88 2.21 -1.12 -1.16 -0.75 -0.94 -0.18 2.44 -0.77 -1.3 -1.56 -0.93 -1.25 -0.65 -1.12 0.03 -2.57 -0.4 -0.32 -0.59 -0.59 -1.49 1.58 -3.65 -1.88 -1.24 1.91 -2.08 -2.09 -1.52 0.49 -0.95 -0.34
AAL19208 (yaeC)
-0.39 0.23 -0.16 0.02 -0.98 1.68 0.86 1.18 -1.32 -0.8 -1.6 -1.79 -0.28 2.09 0.07 -0.52 -0.2 -0.88 -1.0 -0.7 -0.67 0.67 -0.48 -0.43 -0.56 0.44 -0.06 -0.27 0.72 -2.7 -1.91 -0.08 0.56 -1.24 -0.45 -1.02 0.27 -0.48 -0.25
AAL19209 (yaeE)
-0.51 0.4 -0.7 -0.56 -1.91 -0.51 0.37 1.87 -0.4 -1.7 -0.63 -0.44 -0.9 3.05 -0.79 -1.25 -1.77 -0.99 -1.12 -0.8 -0.52 0.53 -1.94 0.68 -0.46 0.1 -0.21 -0.38 -0.05 -1.74 -1.37 -0.82 0.53 -1.95 -1.57 -0.95 1.33 -0.76 -1.45
AAL19210 (abc)
-0.38 0.13 -1.19 -0.49 -2.51 -0.68 -0.14 1.77 0.79 -1.25 1.1 -0.18 -1.26 2.79 -1.51 -0.89 -1.93 -1.82 -1.84 -1.5 -0.28 0.97 -1.36 -0.22 -0.2 0.32 -0.36 0.06 0.54 -1.56 -1.25 -1.45 1.36 -1.6 -1.4 -0.93 0.44 -1.86 -1.68
AAL19553 (ybdH)
-1.47 0.21 0.45 -0.82 -1.3 -0.07 -1.24 1.94 -0.43 -1.39 0.04 -2.56 0.15 3.07 -2.26 -1.02 -1.88 -0.57 -0.58 -0.12 0.07 1.46 -2.55 -0.32 0.14 -1.21 -1.79 -0.74 0.27 -3.6 -0.94 -1.38 1.01 -1.72 -0.02 -2.39 0.03 -0.73 -1.62
AAL19554 (ybdL)
-1.71 -0.08 -1.45 -0.62 -2.83 0.33 -1.18 1.86 -1.11 -2.14 -0.36 -1.86 -1.56 3.25 -1.93 -0.79 -2.27 -2.09 -2.09 -1.82 1.1 0.92 -1.73 0.14 1.18 -0.95 -0.53 -0.86 0.43 -3.62 -1.32 -2.01 1.24 -1.73 -0.75 -0.96 1.1 -2.63 -2.13
AAL19859 (STM0923)
-0.73 - - - - - - 3.74 - - - - - 4.26 - - 0.84 - - - - - - - 1.17 - - - - - - - - - 0.89 - - - -
AAL19933 (ompF)
0.51 -0.76 1.64 -0.54 1.69 -1.93 -4.46 1.69 -0.59 -1.82 -0.78 -3.19 0.31 2.89 -3.08 -0.72 -0.07 -3.43 -3.81 -3.27 -4.87 -0.44 -1.56 -1.69 -3.24 0.54 -0.67 -4.51 0.19 -5.14 -4.94 0.3 0.13 -3.87 -2.38 -4.6 -0.24 2.48 -1.82
AAL20694 (ipk)
-0.36 -0.11 0.07 -0.32 0.8 -0.18 -1.56 1.6 0.17 0.27 0.24 -0.39 0.41 2.47 -1.18 -1.58 -2.41 -1.55 -0.66 -1.28 -1.29 -0.73 -1.61 -0.69 -1.69 0.21 -0.16 0.32 -0.14 -1.28 -0.26 0.59 -0.01 -1.63 -2.31 -0.31 -0.62 0.74 1.05
AAL21097 (folE)
-0.81 -0.67 1.3 -0.48 -1.3 -1.97 -0.95 0.39 -1.3 -1.29 -1.24 -0.94 1.93 2.7 -1.97 -1.4 -2.62 -0.63 -0.54 -0.38 -2.06 -1.63 -1.55 -0.93 -1.25 -0.29 -0.6 -0.1 0.76 -3.69 -1.06 1.55 0.79 -1.55 -1.97 -0.88 -0.49 -0.02 1.66
AAL21937 (serA)
-0.43 -0.01 -2.01 -0.23 -2.94 1.94 0.0 2.02 -2.66 -1.78 -2.34 -2.81 -2.26 3.74 -0.98 -2.06 -2.15 -1.07 -0.9 -1.02 -2.13 -0.03 -3.02 -1.9 0.11 -1.19 -1.5 -1.63 0.91 -4.63 -2.22 -2.32 1.4 -3.2 -2.08 -2.4 -1.03 -2.11 -1.79
AAL21965 (metK)
-0.56 -0.07 -2.04 -0.29 -2.85 0.36 1.28 2.06 0.19 -1.77 0.52 0.15 -1.68 2.85 -1.15 -1.12 -1.71 -1.0 -1.13 -0.93 -0.8 0.38 -2.35 -0.1 -0.68 0.51 -0.07 -0.1 0.38 -1.43 -0.11 -1.7 0.65 -2.38 -1.84 -0.08 -0.28 -2.06 -2.45
AAL22035 (metC)
-0.9 0.4 -0.02 -0.26 -1.75 0.59 -0.33 1.58 -1.05 -0.69 -0.76 -1.54 -0.2 2.64 -0.57 -0.79 -1.93 -0.74 -0.85 -0.53 -0.13 0.17 -1.35 0.61 0.46 -0.19 -0.52 -0.12 0.51 -3.74 -1.13 -0.74 0.65 -1.32 -1.23 -0.99 1.49 -0.94 -0.66
AAL22199 (gltB)
-0.69 0.08 -1.98 -0.1 -2.72 0.77 -1.82 2.99 -1.92 -2.4 -2.22 -1.92 -2.23 3.59 -2.32 -2.01 -3.1 -2.24 -1.7 -2.01 -1.25 -0.78 -3.66 -0.83 -1.53 -0.22 -0.72 -1.88 1.41 -4.96 -2.3 -1.9 1.39 -4.55 -2.63 -2.02 0.08 -1.93 -2.02
AAL22200 (gltD)
-0.31 0.08 -1.71 0.06 -2.22 1.73 -1.63 2.92 -1.9 -2.46 -2.34 -2.01 -2.01 3.41 -2.06 -1.75 -2.97 -2.52 -2.04 -2.14 -0.97 -0.86 -3.66 -0.73 -1.99 -0.37 -0.79 -2.06 1.33 -4.57 -2.37 -1.32 1.26 -4.15 -2.65 -1.93 0.18 -1.86 -1.81
AAL22427 (livJ)
1.22 -0.39 -1.05 -0.01 -2.75 3.27 -2.81 3.03 -0.96 -1.92 0.24 -1.92 -1.71 1.48 -1.43 -3.15 -1.01 -2.22 -2.27 -2.06 -1.96 -1.21 -4.26 -0.49 -1.29 -1.29 -1.21 -1.95 0.68 -4.24 -3.02 -2.05 -0.11 -4.58 -0.04 -1.7 0.7 -2.12 -1.64
AAL22469 (yhjE)
-0.78 0.53 -0.08 -0.73 -2.11 0.55 -1.78 2.63 -1.75 -1.96 -0.68 -2.92 0.12 3.29 -2.25 -1.77 -2.28 -1.24 -1.17 -1.01 -1.19 -0.2 -4.23 -0.27 0.78 -0.99 -2.0 -1.26 0.86 -4.45 -1.88 -1.6 0.84 -2.51 -0.68 -2.24 0.82 -1.12 -1.24
AAL22486 (yhjV)
-0.27 0.43 -1.53 -2.08 -1.82 -3.39 -1.15 2.33 -0.73 -2.89 0.21 -1.43 -0.16 3.7 -1.16 -1.43 -1.44 -1.39 -1.22 -0.95 -3.24 -1.99 -1.16 1.12 -2.21 -0.87 -1.2 -1.55 -1.9 -2.48 -3.31 -2.55 -1.75 -1.35 -1.57 -1.58 2.13 -2.06 -0.97
AAL22487 (dppF)
-2.22 -0.78 -0.19 -1.41 -1.92 -2.33 -3.67 2.84 -2.89 -3.09 -2.49 -2.6 0.31 4.3 -1.07 -2.81 -2.51 -3.08 -3.05 -2.78 -3.17 -1.3 -1.94 -1.27 -2.98 -0.77 -3.5 -1.92 0.02 -6.67 -4.61 -2.23 -0.09 -3.76 -2.17 -4.54 -0.79 -1.47 -0.41
AAL22488 (dppD)
-2.33 -0.72 -0.27 -1.52 -1.75 -2.48 -4.54 2.78 -3.54 -3.03 -3.53 -2.65 0.31 4.32 -2.24 -2.25 -3.22 -3.64 -3.72 -3.36 -3.35 -1.09 -1.46 -1.38 -2.8 -0.49 -3.82 -1.49 0.1 -6.71 -4.41 -1.99 -0.1 -3.1 -2.99 -5.06 -1.03 -1.41 0.18
AAL22489 (dppC)
-2.59 -0.44 -0.77 -1.76 -2.11 -3.32 -4.67 2.73 -3.81 -3.29 -3.65 -2.72 -0.01 4.4 -3.4 -3.34 -4.75 -4.43 -4.2 -4.04 -3.34 -0.57 -3.41 -0.99 -1.64 -0.31 -3.58 -1.99 0.01 -5.76 -4.11 -2.06 -0.13 -4.61 -4.51 -4.34 -0.69 -1.91 0.25
AAL22490 (dppB)
-2.27 -0.97 -1.05 -1.72 -1.77 -4.02 -4.51 2.67 -4.12 -3.72 -3.73 -3.41 0.32 4.38 -3.02 -2.54 -3.75 -3.33 -3.48 -3.35 -3.36 -1.24 -2.27 -1.11 -0.67 -0.82 -3.97 -1.84 -0.06 -5.95 -3.75 -1.32 -0.24 -3.42 -3.43 -4.9 -0.71 -1.83 0.69
AAL22491 (dppA)
-1.65 -1.15 0.19 -1.74 -1.2 -1.8 -3.94 2.64 -4.33 -3.02 -4.65 -4.54 1.08 4.1 -1.52 -0.93 -2.86 -2.13 -2.26 -1.91 -2.21 -0.66 -0.95 -1.7 -0.14 -1.37 -4.39 -1.5 -0.79 -7.07 -3.21 -0.67 -0.92 -1.22 -3.27 -5.88 -1.07 -0.6 0.73
AAL22524 (avtA)
-0.12 0.05 -2.37 -0.75 -1.61 -0.13 0.59 2.16 -1.74 -1.43 -0.87 0.27 -1.55 2.88 0.15 -1.98 -0.32 -1.1 -0.82 -0.83 -1.96 -1.18 -2.16 0.14 -1.21 0.71 -0.12 -1.34 -0.46 -2.9 -1.81 -1.38 -0.61 -2.51 1.85 0.05 0.79 -1.68 -0.54
AAL22751 (ilvG)
-0.71 -0.35 -0.17 0.34 -2.63 -0.54 -2.65 2.12 -1.63 -1.82 -0.97 -3.7 -0.33 3.31 -1.9 -1.1 -1.76 -1.61 -0.99 -1.32 -2.16 -0.81 -3.83 -0.85 -0.39 0.07 -1.89 0.74 2.05 -4.76 -2.89 -2.42 1.6 -3.11 -1.81 -2.41 0.38 0.17 -2.28
AAL22752 (ilvM)
-0.44 -0.81 1.02 -0.68 -1.76 0.8 -2.41 2.47 -2.0 -1.15 -1.65 -4.38 0.64 3.23 -3.37 0.49 -2.91 -3.51 -2.77 -3.0 -1.93 -0.98 -2.71 -0.92 -1.99 -0.39 -2.03 -0.0 1.19 -5.15 -3.49 -2.23 0.85 -2.28 -2.0 -2.15 0.28 1.6 -2.12
AAL22753 (ilvE)
-1.44 -0.16 -0.48 -0.07 -1.67 0.16 -1.33 1.89 -1.14 -0.27 -0.95 -1.51 -0.48 3.19 -1.4 -0.02 -1.99 -2.23 -2.01 -1.79 -1.3 -0.51 -1.72 -0.58 -1.75 0.21 0.06 0.1 1.71 -4.87 -2.19 -1.55 1.34 -2.46 -1.45 -0.33 0.13 0.31 -1.17
AAL22754 (ilvD)
-0.98 -0.3 -0.24 0.33 -1.46 0.1 -1.88 2.27 -1.47 -0.8 -1.76 -1.7 -0.1 3.47 -0.59 -1.04 -2.31 -1.87 -1.74 -1.54 -1.81 -0.65 -2.99 -1.19 -2.14 0.29 -1.05 -0.12 1.67 -4.09 -2.15 -1.92 1.47 -3.51 -2.43 -1.87 -0.41 -0.38 -1.46
AAL22755 (ilvA)
-0.27 -0.06 -0.44 0.15 -1.38 0.59 -2.12 2.3 -1.36 -0.69 -1.27 -1.43 -0.21 3.47 -1.36 -1.34 -2.01 -2.33 -2.17 -1.98 -1.44 -0.23 -3.14 -1.22 -2.09 0.34 -1.12 -0.54 1.56 -1.68 -1.74 -1.99 1.23 -3.54 -2.15 -1.8 -0.47 -0.57 -1.52
AAL22808 (metR)
-0.18 0.39 -0.76 -0.07 -3.14 -0.34 -2.11 1.53 -0.22 -1.97 0.38 -2.05 -1.26 3.21 -2.98 -2.63 -2.68 -2.36 -2.68 -1.99 0.18 0.69 -5.35 0.22 0.53 0.01 -0.02 -0.16 1.03 -3.61 -1.4 -2.05 1.63 -5.26 -1.2 -1.07 1.17 -1.61 -1.85
AAL22809 (metE)
-0.93 -2.12 -4.29 -0.4 -6.04 1.54 -3.73 2.26 -4.52 -4.82 -3.97 -5.81 -4.51 4.56 -5.27 -5.85 -5.54 -5.01 -5.24 -4.83 -4.0 -4.1 -7.5 -3.31 -4.52 -4.44 -4.79 -1.5 1.31 -6.95 -4.74 -4.83 1.09 -6.81 -5.02 -4.7 -2.5 -5.2 -5.23
AAL22940 (metB)
-0.83 -0.13 -1.86 -0.48 -1.6 -0.62 -0.02 1.02 -0.37 -1.21 0.24 -0.59 -1.55 3.07 0.18 -2.31 0.08 0.33 -0.29 0.3 -0.14 -0.74 -2.69 0.39 -0.18 -0.54 0.03 -1.05 0.24 -2.72 -1.96 -1.69 1.17 -3.65 -0.11 -0.6 1.21 -1.33 -1.18
AAL22941 (metL)
-0.93 -0.46 -0.99 -0.34 -1.65 -1.0 -1.68 1.21 -0.22 -1.15 -0.01 -0.19 -1.38 3.88 -1.56 -2.73 -1.32 -1.55 -1.44 -1.32 -0.65 -0.6 -2.97 -0.59 -0.93 -0.29 -0.24 -1.02 0.74 -2.61 -2.31 -1.66 1.33 -3.62 -1.59 -0.98 0.22 -0.72 -1.39
AAL22942 (STM4102)
0.63 0.98 -0.87 -1.03 -1.29 -1.64 -0.84 1.3 -0.21 -1.47 0.86 -1.99 -0.56 3.81 -1.08 -1.62 -0.35 -0.99 -1.04 -0.58 -1.3 -1.35 -2.75 -1.98 -1.2 -0.61 -1.06 -1.02 -0.3 -1.68 -1.65 -1.21 0.33 -1.2 -0.12 -1.85 -1.77 -0.62 -1.03
AAL22945 (metF)
-1.29 -0.83 -2.5 -0.05 -3.81 -0.32 -0.94 2.41 -2.61 -3.58 -1.77 -3.6 -2.06 3.89 -2.3 -2.24 -2.78 -2.16 -2.34 -1.9 -0.33 -1.25 -2.81 -0.86 -0.17 -2.25 -1.73 -1.42 1.34 -4.31 -1.87 -2.03 2.16 -2.96 -1.85 -2.32 0.03 -3.41 -2.37
AAL23006 (metA)
-1.37 -0.56 -1.17 -1.09 -2.13 0.43 -1.58 2.0 -2.09 -1.93 -2.0 -3.4 -1.2 3.89 -2.45 -0.73 -2.88 -2.55 -2.71 -2.09 -0.56 -0.12 -1.08 0.5 -0.45 -1.22 -1.23 -0.83 0.15 -2.6 -1.98 -1.59 0.45 -1.05 -1.73 -2.17 1.6 -1.8 -1.54

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.