Heatmap: Cluster_12 (HCCA)

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(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
11168-O,WT,biofilm extract
11168-O,WT,planktonic cell extract
CG8433,WT,mid-log,Mueller Hinton agar plate
CG8433,WT,mid-log,Mueller Hinton broth
CG8433,WT,mid-log,blood agar plate
NCTC11168,CRISPR-tracrRNA-KO
NCTC11168,WT
NCTC11168,WT,Fe limited
NCTC11168,WT,Fe replete
NCTC11168,WT,chicken intestinal mucus
NCTC11168,WT,cow intestinal mucus
NCTC11168,WT,defined media
NCTC11168,WT,pig intestinal mucus
NCTC11168,WT,sheep intestinal mucus
NCTC11168,WT,turkey intestinal mucus
NCTC11168,cas9-KO
NCTC11168,crRNA3-KO
NCTC11168,fur-KO,Fe limited
NCTC11168,fur-KO,Fe replete
NCTC11168,fur-KO,perR-KO,Fe limited
NCTC11168,fur-KO,perR-KO,Fe replete
NCTC11168,perR-KO,Fe limited
NCTC11168,perR-KO,Fe replete
NCTC11168,tracrRNA-KO
NCTC12661,WT,exponential,spiral
NCTC12661,WT,stationary,filamentous
NCTC12661,WT,stationary,spiral
PT14,WT,exponential,spiral
PT14,WT,stationary,filamentous
PT14,WT,stationary,spiral
Sheep Abortion,WT,24h bile inoculate
Sheep Abortion,WT,24h gallbladder inoculate
Sheep Abortion,WT,2h bile inoculate
Sheep Abortion,WT,2h gallbladder inoculate
Sheep Abortion,WT,laboratory culture
AHY39289 (CJ8421_00060)
-2.04 1.66 -1.15 0.75 1.5 -2.07 -2.07 -5.52 1.23 -3.64 1.33 -2.26 0.77 0.27 -2.79 -2.29 -1.99 -1.39 -3.69 -1.12 1.97 -2.29 2.18 -2.26 -0.63 -5.33 -2.59 0.54 -3.53 -2.66 0.3 -0.9 0.58 0.15 -0.34
AHY39343 (CJ8421_00360)
0.48 1.3 1.11 1.11 0.59 -1.48 -1.66 -0.3 0.19 -0.51 -0.29 -0.95 -0.59 -0.52 -0.11 -1.9 -1.24 -0.9 0.31 -1.23 -0.23 -0.29 -0.27 -1.63 -1.15 -1.06 0.52 -1.65 -2.29 -2.17 0.69 -0.88 1.65 0.89 1.26
AHY39361 (CJ8421_00450)
-0.14 0.49 0.93 2.09 -0.2 -4.1 -3.55 -0.3 1.29 -0.5 0.81 -1.39 0.6 0.45 0.07 -4.08 -4.11 -1.21 1.26 -1.44 0.57 -1.14 -0.2 -4.85 -1.75 -2.51 -0.53 -2.6 -2.55 -2.44 0.5 -0.8 1.28 0.68 0.71
AHY39368 (rpmA)
0.7 0.54 -0.13 -0.88 -0.65 -0.27 -0.96 -0.38 -0.78 -0.75 -0.96 -0.08 -1.22 -0.89 -0.91 -0.9 -0.34 0.03 -0.93 0.14 -0.59 -0.11 -0.67 -0.45 0.35 1.72 0.15 0.03 1.85 1.89 -0.73 -1.34 -1.03 -0.81 -0.81
AHY39419 (CJ8421_00750)
-3.71 -1.7 0.7 -0.21 0.66 -0.46 -0.76 0.33 -0.98 -0.02 -0.68 -0.03 -0.58 -0.74 -0.29 -0.99 -0.63 0.38 -0.98 0.14 -0.78 0.69 0.05 -0.76 1.04 0.56 0.78 1.16 0.38 0.55 -0.13 -0.6 -0.08 -0.29 0.42
AHY39494 (pyrE)
-1.75 -1.66 -0.3 -1.42 -1.46 -1.04 -1.05 0.56 -0.51 -0.96 -0.92 -0.02 -0.85 -0.83 -1.44 -1.32 -0.94 0.28 -0.52 0.38 -0.46 -0.08 -0.65 -1.08 1.07 1.25 0.94 1.68 1.17 0.75 -0.02 0.87 -0.79 0.48 -0.13
AHY39505 (rplT)
-3.05 -3.53 0.83 -0.33 -0.12 -0.74 -0.72 0.2 -0.48 -1.27 -1.6 -0.18 -1.65 -1.63 -1.96 -1.05 -0.91 0.71 -0.82 1.05 0.03 -0.11 -0.52 -0.49 0.57 0.93 -0.0 0.78 1.88 1.82 -0.42 -0.77 -0.76 -0.1 -0.21
AHY39589 (flhB)
1.21 -0.87 -1.57 -2.12 -2.61 -0.49 -0.76 0.02 -1.29 -2.5 -1.44 -1.24 -1.61 -1.69 -2.66 -1.06 -0.47 -0.21 -1.38 0.3 -0.78 -0.47 -1.43 -0.69 0.15 -0.87 -0.37 1.23 2.46 1.41 -0.21 1.81 -1.05 1.2 -0.22
AHY39614 (CJ8421_01795)
-3.38 -1.49 0.94 1.81 -0.79 -3.08 -2.85 -4.7 2.04 -0.52 1.88 -0.33 1.37 1.88 0.52 -2.91 -2.64 -4.41 1.06 -4.82 1.17 -3.92 1.24 -2.98 -2.52 -1.75 -0.99 -4.56 -4.11 -3.85 -0.93 -1.51 -0.42 -0.62 -0.85
AHY39626 (rpsU)
-4.45 -4.44 -0.38 0.86 -0.39 -0.11 0.47 -0.2 1.33 -0.1 0.28 -1.12 -0.05 1.0 1.01 0.82 -0.08 0.07 1.3 -0.23 0.71 -0.8 -0.13 -0.0 -0.46 0.37 -0.38 -1.49 -1.01 -1.1 -0.47 -2.17 -0.53 -1.03 -0.27
AHY39635 (CJ8421_01900)
-1.97 -3.81 -0.44 -1.96 -0.26 -4.34 -4.49 1.45 -3.53 0.58 -2.42 -0.26 -2.43 -2.12 0.3 -4.79 -4.29 1.29 -3.44 1.24 -0.07 1.18 0.34 -4.44 -0.26 1.0 0.72 1.6 0.33 0.62 -0.32 -0.31 0.36 0.42 0.78
AHY39664 (CJ8421_02045)
-1.4 1.53 0.8 1.24 0.53 -1.58 -1.6 -1.49 1.11 -0.71 -0.57 -0.22 -0.89 -0.63 -0.9 -1.37 -1.45 -1.62 0.89 -1.74 0.34 -0.66 0.47 -1.66 -0.56 0.36 -0.11 -0.43 -0.81 -0.81 0.82 0.27 0.62 0.71 0.49
AHY39665 (CJ8421_02050)
-0.27 1.64 1.22 1.74 1.03 -2.35 -2.22 -2.02 0.8 -0.76 0.61 -0.88 0.01 0.34 0.17 -2.52 -2.24 -2.22 0.46 -2.28 -0.1 -1.46 0.1 -2.41 -1.25 -0.55 -0.46 -1.46 -1.42 -1.73 0.7 -0.46 1.24 0.44 0.27
AHY39666 (frdB)
-1.46 0.39 0.75 1.34 0.82 -2.36 -2.15 -1.79 0.85 -0.19 1.03 -0.69 0.79 0.73 0.48 -2.26 -2.18 -1.74 0.62 -1.81 0.16 -1.29 0.1 -2.32 -0.29 0.2 0.76 -1.02 -0.77 -1.05 -0.03 -1.02 1.03 0.3 0.3
AHY39693 (CJ8421_02190)
0.37 1.68 1.41 2.46 -1.28 -1.7 -1.63 -4.0 1.73 -2.66 -0.4 -1.2 -0.76 -0.64 -1.45 -1.96 -1.08 -4.25 1.16 -4.42 0.57 -4.23 0.41 -1.72 -1.06 -2.84 -1.49 -2.72 -3.13 -2.34 -0.41 0.35 0.23 1.86 -1.11
AHY39694 (CJ8421_02195)
0.31 0.76 1.63 2.91 -0.59 -2.79 -2.4 -3.97 1.77 -2.1 0.38 -1.39 -0.06 0.01 -0.79 -2.81 -1.93 -4.41 1.15 -4.35 0.6 -4.26 0.42 -2.91 -1.03 -2.26 -1.0 -2.4 -2.82 -1.84 -0.76 -0.29 0.05 1.11 -1.44
AHY39695 (CJ8421_02200)
-1.61 -0.02 1.3 2.63 -0.95 -2.76 -2.4 -2.41 2.21 -1.99 0.23 -0.96 0.01 0.21 -1.05 -2.71 -1.6 -2.79 1.6 -3.01 1.05 -2.89 0.88 -2.87 -0.75 -1.88 -0.19 -1.03 -2.14 -1.29 -1.06 -0.59 -0.43 0.63 -0.98
AHY39724 (rpmG)
- -9.3 - - - -1.83 -1.1 -0.6 0.82 0.51 1.04 1.25 1.38 0.91 1.06 -1.5 -1.97 -0.18 0.52 0.01 0.67 -0.78 0.48 -1.15 -0.07 -1.68 -0.16 0.24 0.57 0.56 -0.62 0.78 -0.57 0.36 -0.33
AHY39754 (CJ8421_02515)
-0.07 -0.31 0.36 0.12 -0.73 -1.51 -1.75 0.44 0.6 0.45 -0.46 0.99 -0.35 -0.3 -0.43 -1.86 -1.21 0.54 0.43 0.33 0.36 0.57 0.57 -1.56 0.32 -0.04 0.7 -0.11 -0.51 -1.06 0.2 -0.28 -0.16 0.03 0.18
AHY39755 (CJ8421_02520)
-0.53 -0.79 -0.96 -1.55 -2.5 -1.19 -1.4 0.92 0.93 0.72 -1.67 1.33 -1.0 -0.82 -1.78 -1.79 -1.46 1.05 0.81 0.89 0.87 0.88 0.84 -1.33 0.18 -0.33 0.33 -0.37 -0.47 -1.19 0.33 -0.12 -0.62 -0.1 0.26
AHY39756 (CJ8421_02525)
-0.07 -0.89 0.17 -0.51 -1.13 -1.28 -1.36 0.53 0.66 0.1 -0.32 0.93 -0.27 -0.17 -0.62 -1.57 -1.19 0.73 0.59 0.66 0.75 0.38 0.48 -1.33 0.4 -0.19 0.67 -0.09 -0.33 -1.47 0.07 -0.62 -0.25 0.23 0.46
AHY39776 (oorB)
0.39 0.21 1.68 1.79 1.03 -1.98 -1.8 -1.53 0.14 -0.89 0.13 -0.96 -0.38 0.02 -0.04 -2.14 -1.85 -1.66 0.1 -1.55 -0.11 -0.9 0.05 -2.09 -0.61 0.15 0.2 -2.35 -3.53 -3.61 1.17 -1.08 1.31 0.51 1.05
AHY39798 (CJ8421_02735)
-1.72 -0.66 0.01 -1.07 0.32 -1.88 -2.13 0.7 -0.99 0.45 -0.26 0.24 -0.23 -0.02 0.58 -2.38 -1.88 0.56 -0.18 0.43 -0.28 0.84 -0.02 -2.01 -0.03 0.93 0.38 0.63 -0.05 0.04 0.52 -0.32 0.48 -0.39 0.89
AHY39849 (CJ8421_02990)
-2.94 0.06 -0.54 -0.62 0.12 -1.91 -2.13 0.73 0.29 0.77 0.34 0.49 0.53 0.43 0.42 -2.05 -2.0 0.42 0.27 -0.2 -0.26 1.34 0.61 -2.08 0.22 1.13 0.04 -0.3 -0.51 -0.5 0.05 -1.02 -0.23 -0.91 -0.04
AHY39967 (CJ8421_03690)
2.2 -0.41 - - - - -3.84 -0.29 -4.36 -5.43 -3.08 -2.15 -3.92 -3.08 - - -3.89 0.8 -2.79 0.79 -2.54 -0.45 -1.8 -3.54 -2.67 - - -1.99 0.01 -0.86 - 4.35 -3.07 -0.48 -
AHY39968 (CJ8421_03695)
2.42 -1.16 -2.97 -4.5 -3.78 -1.92 -2.93 0.2 -2.05 -2.93 -4.4 -1.04 - -3.94 -5.64 -3.13 -0.66 1.14 -1.85 0.97 -1.7 -0.59 -1.8 -1.63 -0.83 - - 0.22 1.77 1.88 -0.98 3.22 -1.96 -0.52 -4.23
AHY39974 (CJ8421_03725)
0.13 -0.4 -0.72 -1.61 -1.19 -0.48 -0.98 -0.31 -0.94 -0.98 -0.43 -0.47 0.15 -0.67 -1.17 -0.86 -0.59 -0.36 -0.97 -0.0 -0.65 -0.96 -1.08 -0.86 -0.15 -4.46 -3.6 -0.57 1.6 1.05 1.0 1.86 0.89 1.97 0.25
AHY39975 (CJ8421_03730)
-0.93 -1.28 -0.94 -1.78 -2.09 0.25 0.07 0.04 -0.4 -1.56 -3.04 -0.08 -1.58 -1.95 -3.08 -0.28 0.24 0.19 -0.52 0.47 -0.33 -0.24 -0.36 -0.04 0.31 -2.43 -1.87 0.2 1.95 1.5 0.28 1.46 -0.1 1.51 -0.03
AHY39994 (CJ8421_03825)
-0.36 1.78 0.99 1.89 0.54 -3.15 -2.88 -1.53 0.34 -1.19 0.94 0.8 0.88 0.6 0.02 -2.98 -2.98 -1.77 -0.29 -1.67 -0.26 -1.03 0.15 -2.97 -0.65 -0.66 -0.73 -0.52 -1.16 -1.57 0.41 -0.31 0.5 -0.11 0.31
AHY39995 (napG)
0.33 1.14 1.25 2.25 0.42 -2.52 -2.42 -2.01 0.69 -1.94 0.87 0.88 0.6 0.36 -0.48 -2.46 -2.18 -2.12 -0.04 -1.84 0.17 -1.58 0.31 -2.57 -0.53 -1.13 -0.54 -0.88 -1.52 -2.47 0.57 -0.34 0.4 0.27 -0.06
AHY39996 (napH)
0.93 1.75 0.62 1.5 -0.98 -1.57 -1.07 -1.9 1.26 -2.78 -0.23 1.44 -0.86 -0.56 -1.83 -1.42 -1.18 -1.72 0.39 -1.43 0.63 -1.28 0.77 -1.4 -0.06 -0.67 -0.21 -0.69 -1.11 -2.42 0.79 0.08 -0.12 0.31 -0.59
AHY39997 (CJ8421_03840)
-0.2 1.02 1.15 2.23 -0.18 -2.04 -1.99 -2.06 0.73 -1.64 0.97 0.88 0.95 0.63 -0.34 -2.26 -1.8 -1.68 -0.03 -1.46 0.09 -1.46 0.43 -2.26 -0.61 -1.0 -0.55 -0.83 -1.3 -1.83 0.61 -0.66 0.15 0.09 -0.05
AHY40090 (CJ8421_04335)
-1.14 0.37 -1.52 -1.39 0.02 -1.28 -1.59 0.3 -0.93 0.15 0.7 0.26 0.81 0.38 0.09 -1.93 -1.04 -0.09 -0.86 -0.25 -1.06 0.09 -0.92 -2.05 0.67 1.94 -0.08 1.83 0.62 0.51 -1.39 -0.56 -1.51 -0.65 -0.71
AHY40092 (CJ8421_04345)
-6.66 -6.84 - - - -5.77 -5.56 0.07 -1.36 0.6 1.03 -0.35 1.17 0.87 0.86 -5.39 -5.09 -0.46 -1.31 -0.69 -1.86 0.29 -0.53 -5.48 0.85 2.24 0.26 1.8 0.37 1.14 -0.2 -0.06 0.39 -0.43 -0.61
AHY40174 (CJ8421_04755)
-1.96 -0.78 -0.64 -2.1 -2.28 -1.08 -0.51 -0.37 0.57 -1.28 -4.16 1.14 -3.47 -3.65 -4.57 -1.12 -1.11 0.15 0.42 0.67 0.72 -0.64 0.01 -1.36 0.95 0.11 0.76 0.45 1.67 1.09 0.21 1.52 -1.14 0.45 -0.16
AHY40278 (rpsR)
0.73 -1.25 -0.3 -0.48 -1.26 -1.01 -1.09 -0.37 -0.32 0.33 -0.28 0.21 -0.24 -0.16 -0.02 -1.34 -1.02 0.09 -0.78 0.05 0.15 -0.06 0.16 -0.79 0.52 1.31 0.55 0.04 1.2 1.22 -0.56 -0.27 -0.62 0.23 -0.36
AHY40428 (CJ8421_06105)
-0.77 0.57 -0.64 -0.65 -0.02 -0.62 -0.69 -0.18 0.53 1.08 0.65 -0.12 0.39 0.77 0.75 -0.51 -0.62 -0.08 0.29 -0.14 0.02 1.23 0.78 -0.76 -0.72 0.8 -1.88 -0.75 -0.41 -0.73 -0.45 -0.41 -0.88 -0.9 -0.86
AHY40429 (CJ8421_06110)
-3.65 -1.36 -1.29 -1.37 -1.36 0.38 0.15 0.05 0.54 0.43 -1.19 0.16 -1.04 -0.05 -0.76 0.28 0.65 0.29 0.33 -0.0 -0.08 1.3 0.8 0.03 0.1 1.57 -0.72 0.04 0.41 0.98 -1.57 -0.81 -1.88 -1.67 -0.78
AHY40454 (CJ8421_06235)
-0.93 0.06 -0.62 -1.24 -0.13 -1.98 -2.23 0.67 -0.74 0.55 0.94 0.28 1.13 0.83 0.72 -2.27 -1.9 0.18 -0.89 0.23 -0.96 -0.01 -1.04 -2.1 0.5 0.86 0.36 0.47 0.35 0.17 -0.25 0.58 -0.36 -0.04 -0.64
AHY40491 (CJ8421_06420)
-1.76 -0.12 -0.46 -0.97 -0.9 -0.66 -0.74 0.86 0.53 0.19 -0.07 0.89 0.11 0.29 0.0 -0.76 -0.67 0.98 0.48 0.62 0.18 0.73 0.13 -0.9 0.12 -0.18 0.28 -0.11 -0.5 -0.82 -0.08 -0.39 -0.26 -0.1 -0.23
AHY40539 (CJ8421_06740)
0.25 -1.1 -0.61 -0.36 -0.03 -1.27 -1.64 1.09 -0.4 0.11 0.34 0.22 0.5 0.17 -0.18 -1.76 -1.25 0.59 -0.41 0.67 -0.74 -0.64 -1.57 -1.51 0.5 1.09 0.51 0.87 0.55 0.68 -0.12 -0.3 -0.44 -0.54 -0.2
AHY40552 (CJ8421_06805)
-0.66 -0.09 -0.37 0.52 -1.11 -5.2 -4.99 -3.49 1.75 -0.58 1.61 0.9 1.2 1.58 0.14 -5.21 -5.06 -3.38 1.48 -3.41 0.66 -2.42 1.7 -4.84 0.18 -1.04 -1.05 -0.79 -0.77 -0.68 -0.35 -0.18 -0.85 -0.23 -2.22
AHY40553 (CJ8421_06810)
-0.7 -0.09 -0.29 0.7 -1.13 -5.01 -4.97 -3.45 1.73 -0.48 1.76 0.49 1.38 1.64 0.28 -5.47 -4.71 -3.34 1.52 -3.39 0.73 -2.3 1.42 -4.39 0.27 -0.74 -0.94 -0.73 -1.13 -1.1 -0.59 -0.01 -0.9 -0.4 -3.04
AHY40666 (CJ8421_07445)
0.33 0.35 0.79 1.26 0.1 -1.78 -2.03 -0.87 1.07 0.04 0.57 0.17 0.16 0.32 0.17 -2.16 -1.73 -0.73 0.93 -0.68 0.69 -0.5 1.08 -1.88 -0.59 -0.68 -0.54 -0.9 -0.74 -1.69 0.29 -0.53 0.11 0.22 0.03
AHY40675 (CJ8421_07490)
-0.16 -0.7 -1.06 -1.23 -1.75 -0.13 -0.28 -0.13 -0.49 -0.06 0.35 0.15 0.34 0.5 -0.09 -0.57 -0.23 -0.07 -0.59 0.06 -0.4 -0.03 -0.69 -0.13 0.18 0.52 0.01 0.41 0.61 0.58 -0.01 1.19 -0.17 0.37 0.2
AHY40708 (CJ8421_07670)
-5.41 -1.35 -0.28 -0.36 -0.46 -3.2 -3.78 0.64 -0.38 0.83 -0.81 -0.13 -0.61 -0.52 0.53 -3.84 -3.08 0.61 -0.42 0.23 0.19 0.56 0.19 -3.59 0.13 1.53 0.04 1.3 0.49 0.69 0.16 0.33 0.14 -0.13 0.43
AHY40714 (CJ8421_07700)
-1.79 -1.94 -0.97 -1.67 -1.04 -2.47 -2.6 0.28 0.76 0.72 1.0 -0.2 0.9 0.84 0.69 -2.88 -2.88 -0.16 0.67 -0.03 0.67 0.78 0.89 -2.72 -0.46 0.79 -0.39 -0.37 -0.24 0.18 0.01 -2.13 0.7 -0.29 0.48
AHY40736 (CJ8421_07820)
-1.61 -0.05 -0.93 -1.08 -1.38 -4.13 -4.18 0.55 0.51 0.65 -0.54 1.28 -0.25 0.09 -0.22 -4.45 -4.18 0.66 0.5 0.64 0.45 1.11 0.66 -4.53 0.62 -0.0 0.55 -0.07 -0.79 -1.46 0.67 0.31 0.16 0.35 -0.06
AHY40770 (hisG)
-1.72 -1.85 -0.12 -0.69 -0.47 -1.43 -1.51 0.19 -0.17 -0.31 -0.19 0.21 -0.18 -0.29 -0.31 -1.46 -1.32 0.11 -0.18 0.05 -0.3 0.03 -0.33 -1.52 0.48 0.65 0.89 1.06 0.66 0.93 0.01 0.83 0.56 0.5 0.35
AHY40771 (hisD)
-0.27 -1.35 0.68 0.18 -0.31 -1.54 -1.7 0.15 -0.17 -0.29 -0.12 0.0 -0.13 -0.25 -0.39 -2.03 -1.62 0.15 -0.11 0.08 -0.23 0.03 -0.26 -1.66 0.41 0.35 0.9 0.93 0.45 0.27 0.12 0.21 0.54 0.61 0.56
AHY40796 (CJ8421_08120)
-0.71 -1.78 -0.31 -2.17 -1.95 0.05 -0.23 0.8 -1.01 -2.6 -2.19 0.29 -2.44 -2.18 -2.79 -0.19 0.15 0.64 -1.21 1.01 -1.04 0.19 -1.82 0.1 0.03 1.02 -0.87 -0.25 1.49 0.8 -0.78 2.72 -2.07 -0.03 -2.49
AHY40883 (rpsQ)
1.02 -1.49 0.17 0.42 -1.51 -0.63 0.0 -0.49 0.19 -0.96 -1.66 0.15 -1.46 -0.85 -1.77 -0.53 -1.22 0.15 -0.45 0.41 0.51 -0.91 0.43 -0.41 0.21 0.98 -0.33 -0.32 1.66 1.23 -0.5 -0.09 0.05 0.2 -0.42
AHY40900 (CJ8421_08640)
-2.2 -0.55 -3.2 -3.76 -3.84 -1.49 -1.53 1.31 -0.69 -1.9 -3.48 0.12 -2.56 -2.72 -3.57 -1.78 -1.65 1.17 -0.73 1.06 -0.66 0.92 -0.71 -1.42 0.97 1.75 0.64 1.07 1.23 1.69 -0.49 1.29 -1.66 -0.16 -2.09

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.