AHY40291 (CJ8421_05395)

Aliases : CJ8421_05395

Description : transcription-repair coupling factor [Ensembl]. CarD-like/TRCF domain, DEAD/DEAH box helicase, UvrB interaction domain, Helicase conserved C-terminal domain [Interproscan].

Gene families : OG_02_0000637 (OrthoFinder) Phylogenetic Tree(s): OG0000637_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AHY40291
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
AAL20145	STM1216, mfd	transcription-repair coupling factor [Ensembl]....	0.03	OrthoFinder
AEA92888	trcF, OG1RF_10201	transcription-repair coupling factor [Ensembl]....	0.02	OrthoFinder
CBI67226	mfd, HPB8_1669	transcription-repair coupling factor (superfamily II...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001216	DNA-binding transcription activator activity	IEP	Enrichment
MF	GO:0003896	DNA primase activity	IEP	Enrichment
MF	GO:0004325	ferrochelatase activity	IEP	Enrichment
MF	GO:0004486	methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity	IEP	Enrichment
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Enrichment
MF	GO:0004640	phosphoribosylanthranilate isomerase activity	IEP	Enrichment
MF	GO:0004834	tryptophan synthase activity	IEP	Enrichment
BP	GO:0006644	phospholipid metabolic process	IEP	Enrichment
BP	GO:0008654	phospholipid biosynthetic process	IEP	Enrichment
MF	GO:0008914	leucyltransferase activity	IEP	Enrichment
BP	GO:0015833	peptide transport	IEP	Enrichment
MF	GO:0016829	lyase activity	IEP	Enrichment
BP	GO:0042886	amide transport	IEP	Enrichment
MF	GO:0042887	amide transmembrane transporter activity	IEP	Enrichment
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Enrichment
MF	GO:1904680	peptide transmembrane transporter activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	469	627
IPR041471	UvrB_inter	101	189
IPR001650	Helicase_C	667	771
IPR005118	TRCF_C	867	954
IPR003711	CarD-like/TRCF_domain	344	436

External Links

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AHY40291 (CJ8421_05395)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation