AAC75907 (ygeV, b2869)

Aliases : ygeV, b2869

Description : putative sigma-54-interacting transcriptional activator [Ensembl]. PAS domain, Sigma-54 interaction domain, Bacterial regulatory protein [Interproscan].

Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAC75907
Cluster	HCCA: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
AAC73433	prpR, b0330	propionate catabolism operon regulatory protein...	0.03	OrthoFinder
AAL20600	STM1683, tyrR	transcriptional regulator of aromatic amino acid...	0.03	OrthoFinder
AAL21262	STM2361	putative regulatory protein [Ensembl]. PAS fold,...	0.06	OrthoFinder
AAL21739	STM2859, fhlA	formate hydrogen-lyase transcriptional activator for...	0.04	OrthoFinder
CCL17338	BN171_1440022	Transcriptional regulator, sigma-54-dependent [Ensembl]....	0.03	OrthoFinder
CCL19358	BN171_3080005	Transcriptional regulator, sigma-54-dependent [Ensembl]....	0.03	OrthoFinder
CRN65608	qseF	Quorum-sensing regulator protein F [Ensembl]. Sigma-54...	0.02	OrthoFinder
CRO21544	zraR_3	Transcriptional regulatory protein ZraR [Ensembl]....	0.03	OrthoFinder
CRP62097	rocR	Arginine utilization regulatory protein RocR [Ensembl]....	0.04	OrthoFinder
CRP73274	algB_2	Alginate biosynthesis transcriptional regulatory protein...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
MF	GO:0008134	transcription factor binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004126	cytidine deaminase activity	IEP	Enrichment
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	Enrichment
MF	GO:0004612	phosphoenolpyruvate carboxykinase (ATP) activity	IEP	Enrichment
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Enrichment
BP	GO:0006216	cytidine catabolic process	IEP	Enrichment
BP	GO:0008643	carbohydrate transport	IEP	Enrichment
MF	GO:0008982	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	IEP	Enrichment
BP	GO:0009164	nucleoside catabolic process	IEP	Enrichment
BP	GO:0009401	phosphoenolpyruvate-dependent sugar phosphotransferase system	IEP	Enrichment
BP	GO:0009972	cytidine deamination	IEP	Enrichment
MF	GO:0016625	oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor	IEP	Enrichment
MF	GO:0019239	deaminase activity	IEP	Enrichment
MF	GO:0022804	active transmembrane transporter activity	IEP	Enrichment
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	Enrichment
BP	GO:0042454	ribonucleoside catabolic process	IEP	Enrichment
MF	GO:0043546	molybdopterin cofactor binding	IEP	Enrichment
BP	GO:0046087	cytidine metabolic process	IEP	Enrichment
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Enrichment
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	Enrichment
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	Enrichment
BP	GO:1901658	glycosyl compound catabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000014	PAS	162	206
IPR002197	HTH_Fis	548	587
IPR002078	Sigma_54_int	272	440

External Links

UniProtKB	Q46802

AAC75907 (ygeV, b2869)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation