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EDJ90350 (truD, CGSHi22421_09890)


Aliases : truD, CGSHi22421_09890

Description : tRNA pseudouridine synthase D [Ensembl]. tRNA pseudouridine synthase D (TruD) [Interproscan].


Gene families : OG_02_0001495 (OrthoFinder) Phylogenetic Tree(s): OG0001495_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EDJ90350
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AAL21808 STM2928, ygbO putative hydrogenase subunit [Ensembl]. tRNA... 0.04 OrthoFinder
KNA49216 VCV51_030336 tRNA pseudouridine synthase D [Ensembl]. tRNA... 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
InterPro domains Description Start Stop
IPR001656 PsdUridine_synth_TruD 14 168
IPR001656 PsdUridine_synth_TruD 187 333
No external refs found!