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  5. EDJ90884

EDJ90884 (CGSHi22421_03508)


Aliases : CGSHi22421_03508

Description : ABC-type transport system, periplasmic component, involved in antimicrobial peptide resistance [Ensembl]. Bacterial extracellular solute-binding proteins [Interproscan].


Gene families : OG_02_0000055 (OrthoFinder) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EDJ90884
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AAC74376 sapA, b1294 antimicrobial peptide transport ABC transporter... 0.03 OrthoFinder
AAC76569 dppA, b3544 dipeptide/heme ABC transporter periplasmic binding... 0.03 OrthoFinder
AAK99997 spr1194, appA ABC transporter substrate-binding protein-oligopeptide... 0.03 OrthoFinder
AAL19785 STM0849, yliB putative ABC transporter periplasmic binding protein... 0.03 OrthoFinder
AAL20609 STM1692, sapA ABC superfamily peptide transport protein [Ensembl].... 0.03 OrthoFinder
AAL22491 STM3630, dppA dipeptide transport protein [Ensembl]. Bacterial... 0.04 OrthoFinder
AEA95053 opp2A, OG1RF_12366 peptide ABC superfamily ATP binding cassette... 0.03 OrthoFinder
AGT22073 N559_0251 periplasmic dipeptide transport protein precursor... 0.03 OrthoFinder
AGT23463 N559_1721 putative ABC transport system periplasmic binding... 0.03 OrthoFinder
AGT25119 N559_3468 peptide ABC transporter periplasmic substrate-binding... 0.03 OrthoFinder
AGT25383 N559_3745 putative ABC transport system periplasmic dipeptide... 0.03 OrthoFinder
AKI48107 L2625_00134 oligopeptide ABC transporter, oligopeptide-binding... 0.04 OrthoFinder
CCL17024 oppA, BN171_1090005 ABC-type transport system, oligopeptide-family... 0.03 OrthoFinder
CCL19134 appA, BN171_2880001 ABC-type transport system, oligopeptide-family... 0.02 OrthoFinder
CPC72064 nikA, ERS093114_01157 peptide ABC transporter peptide-binding protein... 0.03 OrthoFinder
CPD17760 opp-1A, ERS093114_02216 Oligopeptide transporter putative substrate binding... 0.03 OrthoFinder
CRO32936 hbpA Hemin-binding lipoprotein [Ensembl]. Bacterial... 0.02 OrthoFinder
CRP11968 dppA_2 Dipeptide-binding protein [Ensembl]. Bacterial... 0.02 OrthoFinder
CRP11994 dppA_3 Dipeptide-binding protein [Ensembl]. Bacterial... 0.01 OrthoFinder
CRP12075 dppA_4 Dipeptide-binding protein [Ensembl]. Bacterial... 0.03 OrthoFinder
CRP12127 dppA_5 Dipeptide-binding protein [Ensembl]. Bacterial... 0.03 OrthoFinder
KNA51873 VCV51_030403 bacterial extracellular solute-binding protein, family 5... 0.03 OrthoFinder
KNA52458 VCV51_030122 bacterial extracellular solute-binding protein, family 5... 0.03 OrthoFinder
KNA58587 VCV51_031120 bacterial extracellular solute-binding protein, family 5... 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004096 catalase activity IEP Enrichment
MF GO:0004325 ferrochelatase activity IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006783 heme biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000914 SBP_5_dom 79 479
No external refs found!