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EDJ91461 (aspA, CGSHi22421_06817)


Aliases : aspA, CGSHi22421_06817

Description : aspartate ammonia-lyase [Ensembl]. Sigma-70 factor, Sigma-70 region 3, Sigma-70 region 2 [Interproscan].


Gene families : OG_02_0000197 (OrthoFinder) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EDJ91461
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
ADK86862 rpoD, MPNE_0408 RNA polymerase sigma factor RpoD [Ensembl]. Sigma-70... 0.03 OrthoFinder
AGT22495 N559_0700, RpoD RNA polymerase sigma factor RpoD [Ensembl].... 0.02 OrthoFinder
AKP15973 rpoD, WX61_01945 RNA polymerase sigma factor RpoD [Ensembl]. Sigma-70... 0.03 OrthoFinder
CBI67034 rpoD, HPB8_1477 RNA polymerase primary sigma factor [Ensembl]. Sigma-70... 0.02 OrthoFinder
KNA49526 VCV51_030325, RpoD RNA polymerase sigma factor RpoD [Ensembl]. Sigma-70... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
MF GO:0004664 prephenate dehydratase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006026 aminoglycan catabolic process IEP Enrichment
BP GO:0006027 glycosaminoglycan catabolic process IEP Enrichment
BP GO:0006558 L-phenylalanine metabolic process IEP Enrichment
MF GO:0008745 N-acetylmuramoyl-L-alanine amidase activity IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009094 L-phenylalanine biosynthetic process IEP Enrichment
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Enrichment
BP GO:0009253 peptidoglycan catabolic process IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
BP GO:0046417 chorismate metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0061783 peptidoglycan muralytic activity IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Enrichment
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR007630 RNA_pol_sigma70_r4 563 616
IPR007127 RNA_pol_sigma_70_r1_1 11 88
IPR009042 RNA_pol_sigma70_r1_2 104 134
IPR007627 RNA_pol_sigma70_r2 395 464
IPR007624 RNA_pol_sigma70_r3 474 549
IPR007631 RNA_pol_sigma_70_non-ess 145 361
No external refs found!