CBI67034 (rpoD, HPB8_1477)

Aliases : rpoD, HPB8_1477

Description : RNA polymerase primary sigma factor [Ensembl]. Sigma-70 factor, Sigma-70 region 2, Sigma-70 region 3 [Interproscan].

Gene families : OG_02_0000197 (OrthoFinder) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: CBI67034
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AGT22495 N559_0700, RpoD RNA polymerase sigma factor RpoD [Ensembl].... 0.03 OrthoFinder
CCL17641 sigA, BN171_1640031 RNA polymerase sigma factor SigA1 (sigma-43) [Ensembl].... 0.04 OrthoFinder
CRO83802 rpoD Sigma-70 [Ensembl]. Sigma-70 factor, Sigma-70 region 2,... 0.02 OrthoFinder
EDJ91461 aspA, CGSHi22421_06817 aspartate ammonia-lyase [Ensembl]. Sigma-70 factor,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004817 cysteine-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006935 chemotaxis IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0040011 locomotion IEP Enrichment
BP GO:0042330 taxis IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR009042 RNA_pol_sigma70_r1_2 167 198
IPR007627 RNA_pol_sigma70_r2 446 513
IPR007624 RNA_pol_sigma70_r3 524 598
IPR007630 RNA_pol_sigma70_r4 612 665
UniProtKB D7FFS7