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  5. AGT22248

AGT22248 (N559_0440)


Aliases : N559_0440

Description : 30S ribosomal protein S3 [Ensembl]. KH domain, C-terminal domain, K Homology domain [InterProScan].


Gene families : OG_02_0000568 (OrthoFinder) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT22248
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AAC76339 rpsC, b3314 30S ribosomal subunit protein S3 [Ensembl]. KH domain,... 0.27 OrthoFinder
AAK98999 spr0195, rpsC 30S Ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.16 OrthoFinder
AAL22297 STM3434, rpsC 30S ribosomal subunit protein S3 [Ensembl]. KH domain,... 0.28 OrthoFinder
ADK86863 rpsC, MPNE_0200 ribosomal protein S3 [Ensembl]. 0.13 OrthoFinder
AEA92844 rpsC, OG1RF_10157 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.2 OrthoFinder
AHY40886 rpsC, CJ8421_08570 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.22 OrthoFinder
AKI50561 rpsC, L2625_02771 ribosomal protein S3 [Ensembl]. Ribosomal protein S3, K... 0.17 OrthoFinder
AKP15129 rpsC, WX61_01075 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.09 OrthoFinder
CBI65723 rpsC, HPB8_166 small subunit ribosomal protein S3 [Ensembl]. KH domain,... 0.13 OrthoFinder
CCG27385 No alias SSU ribosomal protein S3p (S3e) [Ensembl]. KH domain,... 0.16 OrthoFinder
CCL20569 rpsC, BN171_70009 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.2 OrthoFinder
CRO73930 rpsC 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.2 OrthoFinder
EDJ91360 CGSHi22421_04633 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.2 OrthoFinder
KNA54978 VCV51_033161 ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.21 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
MF GO:0005539 glycosaminoglycan binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006304 DNA modification IEP Enrichment
BP GO:0006305 DNA alkylation IEP Enrichment
BP GO:0006306 DNA methylation IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0009007 site-specific DNA-methyltransferase (adenine-specific) activity IEP Enrichment
MF GO:0009008 DNA-methyltransferase activity IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0032775 DNA methylation on adenine IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0042834 peptidoglycan binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044728 DNA methylation or demethylation IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004044 KH_dom_type_2 38 111
IPR001351 Ribosomal_S3_C 120 202
No external refs found!