AGT24668 (N559_3005, CysB)

Aliases : N559_3005, CysB

Description : transcriptional regulator CysB [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT24668
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AAC75590	hcaR, b2537	hca operon transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AAL19636	STM0692	putative LysR family transcriptional regulator...	0.03	OrthoFinder
AGT24322	N559_2646, LysR	transcriptional regulator LysR [Ensembl]. LysR substrate...	0.04	OrthoFinder
AGT24425	N559_2752	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
CRN91471	yofA_1	HTH-type transcriptional regulator YofA [Ensembl]. LysR...	0.04	OrthoFinder
CRO37348	benM_3	Ben and cat operon transcriptional regulator [Ensembl]....	0.06	OrthoFinder
CRO43121	cmpR_1	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.03	OrthoFinder
CRO80200	cynR_3	Cyn operon transcriptional activator [Ensembl]. LysR...	0.04	OrthoFinder
CRP00540	cysL_3	CysJI operon transcriptional activator [Ensembl]. LysR...	0.1	OrthoFinder
CRP01952	cmpR_2	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.04	OrthoFinder
CRP03013	gltC_5	HTH-type transcriptional regulator GltC [Ensembl]. LysR...	0.04	OrthoFinder
CRP05348	cmpR_4	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.04	OrthoFinder
CRP53545	cynR_8	Cyn operon transcriptional activator [Ensembl]. LysR...	0.09	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004222	metalloendopeptidase activity	IEP	Enrichment
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	Enrichment
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Enrichment
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Enrichment
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Enrichment
MF	GO:0008987	quinolinate synthetase A activity	IEP	Enrichment
BP	GO:0009435	NAD biosynthetic process	IEP	Enrichment
BP	GO:0015858	nucleoside transport	IEP	Enrichment
BP	GO:0015931	nucleobase-containing compound transport	IEP	Enrichment
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Enrichment
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Enrichment
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Enrichment
BP	GO:0018130	heterocycle biosynthetic process	IEP	Enrichment
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	Enrichment
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Enrichment
MF	GO:0030151	molybdenum ion binding	IEP	Enrichment
MF	GO:0034257	nicotinamide riboside transmembrane transporter activity	IEP	Enrichment
BP	GO:0034258	nicotinamide riboside transport	IEP	Enrichment
BP	GO:0044249	cellular biosynthetic process	IEP	Enrichment
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment
MF	GO:0051536	iron-sulfur cluster binding	IEP	Enrichment
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Enrichment
MF	GO:0051540	metal cluster binding	IEP	Enrichment
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	Enrichment
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	Enrichment
BP	GO:1901264	carbohydrate derivative transport	IEP	Enrichment
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Enrichment
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Enrichment
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Enrichment
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Enrichment
BP	GO:1901576	organic substance biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	3	64
IPR005119	LysR_subst-bd	92	292

External Links

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AGT24668 (N559_3005, CysB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation