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  5. AGT24825

AGT24825 (N559_3165)


Aliases : N559_3165

Description : spermidine/putrescine ABC transporter membrane protein [Ensembl]. transmembrane domain MetI-like [InterProScan].


Gene families : OG_02_0000276 (OrthoFinder) Phylogenetic Tree(s): OG0000276_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT24825
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AAC73944 potI, b0857 putrescine ABC transporter permease [Ensembl].... 0.03 OrthoFinder
AAC74208 potC, b1124 spermidine/putrescine ABC transporter permease... 0.04 OrthoFinder
AAC74525 ydcV, b1443 putative ABC transporter permease [Ensembl].... 0.03 OrthoFinder
AAL00048 spr1244, potC ABC transporter membrane-spanning... 0.04 OrthoFinder
AAL19816 STM0880, potI putrescine transporter [Ensembl].... 0.08 OrthoFinder
AKI48759 potC, L2625_00830 spermidine/putrescine ABC transporter, permease protein... 0.05 OrthoFinder
AKP15568 ydcV, WX61_01528 Inner membrane ABC transporter permease protein YdcV... 0.03 OrthoFinder
CPC39929 ydcV, ERS093114_00323 PotC [Ensembl]. Binding-protein-dependent transport... 0.04 OrthoFinder
CRO12320 ydcV_1 Inner membrane ABC transporter permease protein YdcV... 0.04 OrthoFinder
CRO92466 ydcV_3 Inner membrane ABC transporter permease protein YdcV... 0.03 OrthoFinder
CRO93042 ydcV_4 Inner membrane ABC transporter permease protein YdcV... 0.03 OrthoFinder
KNA57822 VCV51_032791 binding-protein-dependent transport system inner... 0.04 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008360 regulation of cell shape IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
CC GO:0009360 DNA polymerase III complex IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Enrichment
BP GO:0022604 regulation of cell morphogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0050793 regulation of developmental process IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000515 MetI-like 75 253
No external refs found!