AGT25018 (N559_3365)

Aliases : N559_3365

Description : ATP-dependent Clp protease ATP-binding subunit [Ensembl]. AAA lid domain, D2-small domain, Clp amino terminal domain, AAA domain (Cdc48 subfamily), ATPase family associated with various cellular activities (AAA) [InterProScan].

Gene families : OG_02_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT25018
Cluster	HCCA: Cluster_53

Target	Alias	Description	ECC score	Gene Family Method
AAC73969	clpA, b0882	ATPase and specificity subunit of ClpA-ClpP...	0.05	OrthoFinder
AAL19881	STM0945, clpA	ATP-binding subunit of serine protease [Ensembl]....	0.03	OrthoFinder
AKP15926	clpB, WX61_01896	Chaperone protein ClpB [Ensembl]. C-terminal, AAA lid...	0.02	OrthoFinder
CRN66395	clpB_1	Heat shock protein F84.1 [Ensembl]. C-terminal, AAA lid...	0.03	OrthoFinder
KNA53871	VCV51_030809, ClpA	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003725	double-stranded RNA binding	IEP	Enrichment
MF	GO:0003839	gamma-glutamylcyclotransferase activity	IEP	Enrichment
MF	GO:0004175	endopeptidase activity	IEP	Enrichment
MF	GO:0004222	metalloendopeptidase activity	IEP	Enrichment
BP	GO:0006749	glutathione metabolic process	IEP	Enrichment
BP	GO:0006751	glutathione catabolic process	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
MF	GO:0008237	metallopeptidase activity	IEP	Enrichment
MF	GO:0009881	photoreceptor activity	IEP	Enrichment
MF	GO:0009882	blue light photoreceptor activity	IEP	Enrichment
BP	GO:0010035	response to inorganic substance	IEP	Enrichment
BP	GO:0010038	response to metal ion	IEP	Enrichment
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	Enrichment
MF	GO:0016842	amidine-lyase activity	IEP	Enrichment
BP	GO:0030163	protein catabolic process	IEP	Enrichment
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	Enrichment
MF	GO:0038023	signaling receptor activity	IEP	Enrichment
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Enrichment
BP	GO:0043171	peptide catabolic process	IEP	Enrichment
BP	GO:0044273	sulfur compound catabolic process	IEP	Enrichment
BP	GO:0046688	response to copper ion	IEP	Enrichment
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Enrichment
MF	GO:0060089	molecular transducer activity	IEP	Enrichment
MF	GO:0071949	FAD binding	IEP	Enrichment
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR041546	ClpA/ClpB_AAA_lid	351	453
IPR019489	Clp_ATPase_C	654	734
IPR004176	Clp_R_dom	13	62
IPR003959	ATPase_AAA_core	487	648
IPR003959	ATPase_AAA_core	212	343

External Links

No external refs found!

AGT25018 (N559_3365)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation