AGT26495 (N559_4911)

Aliases : N559_4911

Description : fused DNA-binding response regulator [Ensembl]. Response regulator receiver domain, Sigma-54 interaction domain, DNA binding HTH domain, RNA polymerase sigma factor 54 interaction domain, Fis family [InterProScan].

Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AGT26495
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AAC73433 prpR, b0330 propionate catabolism operon regulatory protein... 0.1 OrthoFinder
AAC75280 atoC, b2220 fused response regulator of ato operon, in two-component... 0.07 OrthoFinder
AAC75607 glrR, b2554 response regulator regulating glmY sRNA in two-component... 0.03 OrthoFinder
AAC76978 zraR, b4004 fused DNA-binding response regulator in two-component... 0.06 OrthoFinder
AAL19321 STM0367, prpR regulator for prp operon (EBP family) [Ensembl].... 0.08 OrthoFinder
AAL20608 STM1691, pspF transcription activator [Ensembl]. Sigma-54 interaction... 0.04 OrthoFinder
CCL19199 BN171_2950001 Transcriptional regulator, sigma-54-dependent [Ensembl].... 0.03 OrthoFinder
CRO96924 No alias (S)-limonene 6-monooxygenase [Ensembl]. PAS fold,... 0.12 OrthoFinder
CRP73274 algB_2 Alginate biosynthesis transcriptional regulatory protein... 0.03 OrthoFinder
CRP79684 zraR_6 Transcriptional regulatory protein ZraR [Ensembl].... 0.02 OrthoFinder
KNA50400 VCV51_031426 sigma-54 interaction domain-containing protein... 0.03 OrthoFinder
KNA55086 VCV51_031847 nitrogen regulation protein NR(I) [Ensembl]. Sigma-54... 0.03 OrthoFinder
KNA58588 VCV51_031119 psp operon transcriptional activator [Ensembl]. Sigma-54... 0.03 OrthoFinder
KNA59396 VCV51_031296 sigma-54 interaction domain-containing protein... 0.02 OrthoFinder
KNA60791 VCV51_032053 sigma-54 interaction domain-containing protein... 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008134 transcription factor binding IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
InterPro domains Description Start Stop
IPR001789 Sig_transdc_resp-reg_receiver 8 116
IPR002197 HTH_Fis 405 443
IPR002078 Sigma_54_int 141 307
No external refs found!