AGT26495 (N559_4911)

Aliases : N559_4911

Description : fused DNA-binding response regulator [Ensembl]. Response regulator receiver domain, Sigma-54 interaction domain, DNA binding HTH domain, RNA polymerase sigma factor 54 interaction domain, Fis family [InterProScan].

Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT26495
Cluster	HCCA: Cluster_50

Target	Alias	Description	ECC score	Gene Family Method
AAC73433	prpR, b0330	propionate catabolism operon regulatory protein...	0.1	OrthoFinder
AAC75280	atoC, b2220	fused response regulator of ato operon, in two-component...	0.07	OrthoFinder
AAC75607	glrR, b2554	response regulator regulating glmY sRNA in two-component...	0.03	OrthoFinder
AAC76978	zraR, b4004	fused DNA-binding response regulator in two-component...	0.06	OrthoFinder
AAL19321	STM0367, prpR	regulator for prp operon (EBP family) [Ensembl]....	0.08	OrthoFinder
AAL20608	STM1691, pspF	transcription activator [Ensembl]. Sigma-54 interaction...	0.04	OrthoFinder
CCL19199	BN171_2950001	Transcriptional regulator, sigma-54-dependent [Ensembl]....	0.03	OrthoFinder
CRO96924	No alias	(S)-limonene 6-monooxygenase [Ensembl]. PAS fold,...	0.12	OrthoFinder
CRP73274	algB_2	Alginate biosynthesis transcriptional regulatory protein...	0.03	OrthoFinder
CRP79684	zraR_6	Transcriptional regulatory protein ZraR [Ensembl]....	0.02	OrthoFinder
KNA50400	VCV51_031426	sigma-54 interaction domain-containing protein...	0.03	OrthoFinder
KNA55086	VCV51_031847	nitrogen regulation protein NR(I) [Ensembl]. Sigma-54...	0.03	OrthoFinder
KNA58588	VCV51_031119	psp operon transcriptional activator [Ensembl]. Sigma-54...	0.03	OrthoFinder
KNA59396	VCV51_031296	sigma-54 interaction domain-containing protein...	0.02	OrthoFinder
KNA60791	VCV51_032053	sigma-54 interaction domain-containing protein...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEA	Interproscan
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
MF	GO:0008134	transcription factor binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
MF	GO:0004673	protein histidine kinase activity	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
BP	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	IEP	Enrichment
MF	GO:0016301	kinase activity	IEP	Enrichment
MF	GO:0016740	transferase activity	IEP	Enrichment
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Enrichment
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Enrichment
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Enrichment
MF	GO:0016832	aldehyde-lyase activity	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
BP	GO:0019720	Mo-molybdopterin cofactor metabolic process	IEP	Enrichment
MF	GO:0030246	carbohydrate binding	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	Enrichment
BP	GO:0051189	prosthetic group metabolic process	IEP	Enrichment
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Enrichment
MF	GO:0140299	small molecule sensor activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001789	Sig_transdc_resp-reg_receiver	8	116
IPR002197	HTH_Fis	405	443
IPR002078	Sigma_54_int	141	307

External Links

No external refs found!

AGT26495 (N559_4911)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation