AKI49374 (lisR, L2625_01474)

Aliases : lisR, L2625_01474

Description : two component response regulator [Ensembl]. OmpR/PhoB-type DNA-binding domain, Signal transduction response regulator [Interproscan].

Gene families : OG_02_0000001 (OrthoFinder) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AKI49374
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AAC76061	qseB, b3025	quorum sensing DNA-binding response regulator in...	0.01	OrthoFinder
AAC76894	cpxR, b3912	response regulator in two-component regulatory system...	0.03	OrthoFinder
AAK98880	spr0076, rr08	Response regulator [Ensembl]. Transcriptional regulatory...	0.04	OrthoFinder
AAL22364	STM3502, ompR	response regulator in two-component regulatory system...	0.02	OrthoFinder
AGT22533	N559_0740, QseB	DNA-binding transcriptional regulator QseB [Ensembl]....	0.03	OrthoFinder
AGT23469	N559_1728, BaeR	DNA-binding transcriptional regulator BaeR [Ensembl]....	0.03	OrthoFinder
AGT24481	N559_2808, RstA	DNA-binding transcriptional regulator RstA [Ensembl]....	0.04	OrthoFinder
AGT26042	N559_4437, CreB	DNA-binding response regulator CreB [Ensembl]. Response...	0.03	OrthoFinder
CCL16989	BN171_1060003	Two-component response regulator [Ensembl]. Response...	0.03	OrthoFinder
CCL17156	BN171_1330017	Two-component response regulator [Ensembl]. Response...	0.03	OrthoFinder
CCL17650	BN171_1640040	Two-component response regulator [Ensembl]. Response...	0.06	OrthoFinder
CCL17733	BN171_1740008	Two-component response regulator [Ensembl]. Response...	0.04	OrthoFinder
CCL17829	vanR, BN171_1830003	Two-component response regulator [Ensembl]. Response...	0.04	OrthoFinder
CCL18024	BN171_2030010	Two-component response regulator [Ensembl]. Response...	0.04	OrthoFinder
CCL18738	BN171_260007	Two-component response regulator [Ensembl]. Response...	0.04	OrthoFinder
CCL18961	BN171_2770012	Two-component response regulator [Ensembl]. Response...	0.05	OrthoFinder
CCL19804	BN171_3490007	Two-component response regulator [Ensembl]. Response...	0.03	OrthoFinder
CCL20068	BN171_3690012	Two-component response regulator, CheY family [Ensembl]....	0.04	OrthoFinder
CCL20132	BN171_370006	Two-component response regulator [Ensembl]. Response...	0.03	OrthoFinder
CCL20251	BN171_390005	Two-component response regulator [Ensembl]. Response...	0.03	OrthoFinder
CCL20618	BN171_750002	Two-component response regulator [Ensembl]. Response...	0.05	OrthoFinder
CPC52277	graR, ERS093114_00694	YtsA [Ensembl]. Transcriptional regulatory protein,...	0.03	OrthoFinder
CPC70217	vicR, ERS093114_01104	Two-component response regulator [Ensembl]....	0.01	OrthoFinder
CRN89694	tctD	Transcriptional regulatory protein tctD [Ensembl]....	0.02	OrthoFinder
CRO38230	rstA	Transcriptional regulatory protein RstA [Ensembl]....	0.02	OrthoFinder
CRO52494	czcR_1	Transcriptional activator protein CzcR [Ensembl]....	0.01	OrthoFinder
CRP58313	czcR_4	Transcriptional activator protein CzcR [Ensembl]....	0.01	OrthoFinder
KNA54887	VCV51_031804	response regulator receiver domain-containing protein...	0.04	OrthoFinder
KNA60550	VCV51_032221	response regulator receiver domain-containing protein...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Enrichment
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
MF	GO:0004673	protein histidine kinase activity	IEP	Enrichment
MF	GO:0004784	superoxide dismutase activity	IEP	Enrichment
BP	GO:0006801	superoxide metabolic process	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
BP	GO:0009403	toxin biosynthetic process	IEP	Enrichment
CC	GO:0016021	integral component of membrane	IEP	Enrichment
MF	GO:0016301	kinase activity	IEP	Enrichment
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Enrichment
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Enrichment
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Enrichment
MF	GO:0016783	sulfurtransferase activity	IEP	Enrichment
CC	GO:0019008	molybdopterin synthase complex	IEP	Enrichment
CC	GO:0031224	intrinsic component of membrane	IEP	Enrichment
MF	GO:0034618	arginine binding	IEP	Enrichment
MF	GO:0043546	molybdopterin cofactor binding	IEP	Enrichment
MF	GO:0043565	sequence-specific DNA binding	IEP	Enrichment
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Enrichment
BP	GO:0051259	protein complex oligomerization	IEP	Enrichment
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Enrichment
MF	GO:0140110	transcription regulator activity	IEP	Enrichment
MF	GO:0140299	small molecule sensor activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001867	OmpR/PhoB-type_DNA-bd	152	224
IPR001789	Sig_transdc_resp-reg_receiver	4	112

External Links

No external refs found!

AKI49374 (lisR, L2625_01474)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation